main -> joss

.gitignore

@@ -7,6 +7,7 @@ bohb_model_tuner/out*
 store/
 */store
 ../store_tutorials/store
+store/
 
 __pycache__/
 .ipynb_checkpoints/

docs/installation.rst

@@ -56,7 +56,7 @@ like `/bin/bash` or `/bin/zsh`, or `/bin/sh`.
 
     .. code-block:: bash
 
-        echo 'export $TelescopeML_reference_data="/PATH_TO_YOUR_TelescopeML_project/" ' >>~/.zshrc
+        echo 'export TelescopeML_reference_data="/PATH_TO_YOUR_TelescopeML_project/" ' >>~/.zshrc
         source ~/.zshrc
         echo $TelescopeML_reference_data
 
@@ -65,15 +65,15 @@ like `/bin/bash` or `/bin/zsh`, or `/bin/sh`.
 
     .. code-block:: bash
 
-        echo 'export $TelescopeML_reference_data="/PATH_TO_YOUR_TelescopeML_project/"' >>~/.bash_profile
+        echo 'export TelescopeML_reference_data="/PATH_TO_YOUR_TelescopeML_project/"' >>~/.bash_profile
         source ~/.bash_profile
         echo $TelescopeML_reference_data
 
     * if your sell is `/bin/sh`:
 
     .. code-block:: bash
 
-        echo 'export $TelescopeML_reference_data="/PATH_TO_YOUR_TelescopeML_project/"' >>~/.profile
+        echo 'export TelescopeML_reference_data="/PATH_TO_YOUR_TelescopeML_project/"' >>~/.profile
         source ~/.profile
         echo $TelescopeML_reference_data
 
@@ -91,12 +91,12 @@ modern Linux system.
 
 .. code-block:: bash
 
-    echo 'export $TelescopeML_reference_data="/PATH_TO_YOUR_TelescopeML_project/" ' >>~/.bashrc
+    echo 'export TelescopeML_reference_data="/PATH_TO_YOUR_TelescopeML_project/" ' >>~/.bashrc
     source ~/.bashrc
     echo $TelescopeML_reference_data
 
 
-Replace `PATH_TO_YOUR_TelescopeML_project` with the actual path to your TelescopeML directory.
+Replace `PATH_TO_YOUR_TelescopeML_project` with the actual path to your *reference_data* folder that you downloaded in step 1.
 
 
 

enviroment_nobuild.yml

@@ -0,0 +1,256 @@
+name: TelescopeML
+channels:
+  - conda-forge
+dependencies:
+  - anyio=3.7.1
+  - appnope=0.1.3
+  - argon2-cffi=21.3.0
+  - argon2-cffi-bindings=21.2.0
+  - arrow=1.2.3
+  - astropy=5.3.1
+  - asttokens=2.2.1
+  - async-lru=2.0.3
+  - attrs=23.1.0
+  - babel=2.12.1
+  - backcall=0.2.0
+  - backports=1.0
+  - backports.functools_lru_cache=1.6.5
+  - beautifulsoup4=4.12.2
+  - bleach=6.0.0
+  - bokeh=3.2.1
+  - brotli=1.0.9
+  - brotli-bin=1.0.9
+  - brotli-python=1.0.9
+  - bzip2=1.0.8
+  - c-ares=1.19.1
+  - ca-certificates=2023.7.22
+  - cached-property=1.5.2
+  - cached_property=1.5.2
+  - cffi=1.15.1
+  - charset-normalizer=3.2.0
+  - comm=0.1.3
+  - contourpy=1.1.0
+  - cycler=0.11.0
+  - debugpy=1.6.7
+  - decorator=5.1.1
+  - defusedxml=0.7.1
+  - entrypoints=0.4
+  - exceptiongroup=1.1.2
+  - executing=1.2.0
+  - flit-core=3.9.0
+  - fonttools=4.41.1
+  - fqdn=1.5.1
+  - freetype=2.12.1
+  - h5py=3.6.0
+  - hdf5=1.12.1
+  - idna=3.4
+  - importlib-metadata=6.8.0
+  - importlib-resources=6.0.0
+  - importlib_metadata=6.8.0
+  - importlib_resources=6.0.0
+  - ipykernel=6.25.0
+  - ipython=8.14.0
+  - ipython_genutils=0.2.0
+  - ipywidgets=8.0.7
+  - isoduration=20.11.0
+  - jedi=0.18.2
+  - jinja2=3.1.2
+  - joblib=1.3.0
+  - json5=0.9.14
+  - jsonschema=4.18.4
+  - jsonschema-specifications=2023.7.1
+  - jsonschema-with-format-nongpl=4.18.4
+  - jupyter=1.0.0
+  - jupyter-lsp=2.2.0
+  - jupyter_client=8.3.0
+  - jupyter_console=6.6.3
+  - jupyter_core=5.3.1
+  - jupyter_events=0.6.3
+  - jupyter_server=2.7.0
+  - jupyter_server_terminals=0.4.4
+  - jupyterlab=4.0.3
+  - jupyterlab_pygments=0.2.2
+  - jupyterlab_server=2.24.0
+  - jupyterlab_widgets=3.0.8
+  - kiwisolver=1.4.4
+  - krb5=1.21.1
+  - lcms2=2.15
+  - lerc=4.0.0
+  - libblas=3.9.0
+  - libbrotlicommon=1.0.9
+  - libbrotlidec=1.0.9
+  - libbrotlienc=1.0.9
+  - libcblas=3.9.0
+  - libcurl=8.2.1
+  - libcxx=16.0.6
+  - libdeflate=1.18
+  - libedit=3.1.20191231
+  - libev=4.33
+  - libffi=3.4.2
+  - libgfortran=5.0.0
+  - libgfortran5=12.3.0
+  - libjpeg-turbo=2.1.5.1
+  - liblapack=3.9.0
+  - libnghttp2=1.52.0
+  - libopenblas=0.3.23
+  - libpng=1.6.39
+  - libprotobuf=3.19.6
+  - libsodium=1.0.18
+  - libsqlite=3.42.0
+  - libssh2=1.11.0
+  - libtiff=4.5.1
+  - libwebp-base=1.3.1
+  - libxcb=1.15
+  - libzlib=1.2.13
+  - llvm-openmp=16.0.6
+  - markupsafe=2.1.3
+  - matplotlib=3.7.2
+  - matplotlib-base=3.7.2
+  - matplotlib-inline=0.1.6
+  - mistune=3.0.0
+  - munkres=1.1.4
+  - nb_conda_kernels=2.3.1
+  - nbclient=0.8.0
+  - nbconvert=7.7.3
+  - nbconvert-core=7.7.3
+  - nbconvert-pandoc=7.7.3
+  - nbformat=5.9.1
+  - ncurses=6.4
+  - nest-asyncio=1.5.6
+  - notebook=7.0.0
+  - notebook-shim=0.2.3
+  - openjpeg=2.5.0
+  - openssl=3.1.4
+  - overrides=7.3.1
+  - packaging=23.1
+  - pandas=2.0.3
+  - pandoc=3.1.3
+  - pandocfilters=1.5.0
+  - parso=0.8.3
+  - patsy=0.5.3
+  - pexpect=4.8.0
+  - pickleshare=0.7.5
+  - pillow=10.0.0
+  - pip=23.2.1
+  - pkgutil-resolve-name=1.3.10
+  - platformdirs=3.9.1
+  - pooch=1.7.0
+  - prometheus_client=0.17.1
+  - prompt-toolkit=3.0.39
+  - prompt_toolkit=3.0.39
+  - psutil=5.9.5
+  - pthread-stubs=0.4
+  - ptyprocess=0.7.0
+  - pure_eval=0.2.2
+  - pycparser=2.21
+  - pyerfa=2.0.0.3
+  - pygments=2.15.1
+  - pyobjc-core=9.2
+  - pyobjc-framework-cocoa=9.2
+  - pyparsing=3.0.9
+  - pysocks=1.7.1
+  - python=3.9.16
+  - python-dateutil=2.8.2
+  - python-fastjsonschema=2.18.0
+  - python-json-logger=2.0.7
+  - python-tzdata=2023.3
+  - python_abi=3.9
+  - pytz=2023.3.post1
+  - pyyaml=6.0.1
+  - pyzmq=25.1.0
+  - qtconsole-base=5.4.4
+  - qtpy=2.4.1
+  - readline=8.2
+  - referencing=0.30.0
+  - requests=2.31.0
+  - rfc3339-validator=0.1.4
+  - rfc3986-validator=0.1.1
+  - rpds-py=0.9.2
+  - scikit-learn=1.3.0
+  - scipy=1.11.1
+  - seaborn=0.12.2
+  - seaborn-base=0.12.2
+  - send2trash=1.8.2
+  - six=1.16.0
+  - sniffio=1.3.0
+  - soupsieve=2.3.2.post1
+  - stack_data=0.6.2
+  - statsmodels=0.14.0
+  - terminado=0.17.1
+  - threadpoolctl=3.2.0
+  - tinycss2=1.2.1
+  - tk=8.6.12
+  - tomli=2.0.1
+  - tornado=6.3.2
+  - traitlets=5.9.0
+  - typing-extensions=4.8.0
+  - typing_extensions=4.8.0
+  - typing_utils=0.1.0
+  - tzdata=2023c
+  - unicodedata2=15.0.0
+  - uri-template=1.3.0
+  - urllib3=2.0.7
+  - wcwidth=0.2.6
+  - webcolors=1.13
+  - webencodings=0.5.1
+  - websocket-client=1.6.1
+  - wheel=0.41.0
+  - widgetsnbextension=4.0.8
+  - xorg-libxau=1.0.11
+  - xorg-libxdmcp=1.1.3
+  - xyzservices=2023.7.0
+  - xz=5.2.6
+  - yaml=0.2.5
+  - zeromq=4.3.4
+  - zipp=3.16.2
+  - zlib=1.2.13
+  - zstd=1.5.2
+  - pip:
+      - absl-py==2.0.0
+      - alabaster==0.7.13
+      - astunparse==1.6.3
+      - cachetools==5.3.2
+      - certifi==2023.11.17
+      - docutils==0.20.1
+      - flatbuffers==23.5.26
+      - gast==0.5.4
+      - google-auth==2.23.3
+      - google-auth-oauthlib==1.0.0
+      - google-pasta==0.2.0
+      - grpcio==1.59.2
+      - imagesize==1.4.1
+      - jsonpointer==2.4
+      - keras==2.14.0
+      - libclang==16.0.6
+      - markdown==3.5
+      - ml-dtypes==0.2.0
+      - numpy==1.26.1
+      - oauthlib==3.2.2
+      - opt-einsum==3.3.0
+      - protobuf==4.24.4
+      - pyasn1==0.5.0
+      - pyasn1-modules==0.3.0
+      - pydot==1.4.2
+      - python-graphviz==0.20.1
+      - requests-oauthlib==1.3.1
+      - rsa==4.9
+      - setuptools==69.0.0
+      - snowballstemmer==2.2.0
+      - spectres==2.2.0
+      - sphinx==7.2.6
+      - sphinxcontrib-applehelp==1.0.7
+      - sphinxcontrib-devhelp==1.0.5
+      - sphinxcontrib-htmlhelp==2.0.4
+      - sphinxcontrib-jsmath==1.0.1
+      - sphinxcontrib-qthelp==1.0.6
+      - sphinxcontrib-serializinghtml==1.1.9
+      - tensorboard==2.14.1
+      - tensorboard-data-server==0.7.2
+      - tensorflow==2.14.0
+      - tensorflow-estimator==2.14.0
+      - tensorflow-io-gcs-filesystem==0.34.0
+      - tensorflow-macos==2.14.0
+      - termcolor==2.3.0
+      - werkzeug==3.0.1
+      - wrapt==1.14.1
+prefix: /Users/egn/miniforge3/envs/TelescopeML