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| # Changelog | ||
| # CHANGELOG | ||
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| <!--next-version-placeholder--> | ||
| ## v4.0.7 (2024-06-28) | ||
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| ### Fix | ||
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| * fix: Remove author from __init__.py ([`2d48c4a`](https://github.com/EUCANCan/variant-extractor/commit/2d48c4a3bcdabb6e2d1842b562ac25f0d2025faa)) | ||
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| ### Performance | ||
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| * perf: Reduce dataframe memory footprint ([`011f2bb`](https://github.com/EUCANCan/variant-extractor/commit/011f2bb2612f1b2f7f38701e95919f2b63c3f222)) | ||
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| ## v4.0.6 (2023-03-08) | ||
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| ### Fix | ||
| * Fix missing fields in str conversion ([`4bbef95`](https://github.com/EUCANCan/variant-extractor/commit/4bbef9546c1c3992a75f3146f67dac0def76c641)) | ||
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| * fix: Fix missing fields in str conversion ([`4bbef95`](https://github.com/EUCANCan/variant-extractor/commit/4bbef9546c1c3992a75f3146f67dac0def76c641)) | ||
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| ## v4.0.5 (2023-03-06) | ||
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| ### Fix | ||
| * Fix Python3.6 typings ([`5b3bdd6`](https://github.com/EUCANCan/variant-extractor/commit/5b3bdd696437747c5a9cf3874392817bdee0f2d7)) | ||
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| * fix: Fix Python3.6 typings ([`5b3bdd6`](https://github.com/EUCANCan/variant-extractor/commit/5b3bdd696437747c5a9cf3874392817bdee0f2d7)) | ||
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| ## v4.0.4 (2023-03-02) | ||
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| ### Performance | ||
| * Improve __str__ performance ([`ec14074`](https://github.com/EUCANCan/variant-extractor/commit/ec140748b5abd31284580c5eacfd7bb2e44cacde)) | ||
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| * perf: Improve __str__ performance ([`ec14074`](https://github.com/EUCANCan/variant-extractor/commit/ec140748b5abd31284580c5eacfd7bb2e44cacde)) | ||
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| ## v4.0.3 (2023-03-02) | ||
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| ### Performance | ||
| * Improve I/O speed by lazy loading fields ([`93782fc`](https://github.com/EUCANCan/variant-extractor/commit/93782fc05585981a3d3ef20a6705e18160486a47)) | ||
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| * perf: Improve I/O speed by lazy loading fields ([`93782fc`](https://github.com/EUCANCan/variant-extractor/commit/93782fc05585981a3d3ef20a6705e18160486a47)) | ||
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| ## v4.0.2 (2023-02-16) | ||
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| ### Fix | ||
| * Add __init__ file to private module ([`549b7c5`](https://github.com/EUCANCan/variant-extractor/commit/549b7c53fcd6c8ede96c177c4f65e414b260c7f5)) | ||
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| * fix: Add __init__ file to private module ([`549b7c5`](https://github.com/EUCANCan/variant-extractor/commit/549b7c53fcd6c8ede96c177c4f65e414b260c7f5)) | ||
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| ## v4.0.1 (2023-02-15) | ||
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| ### Fix | ||
| * Add PyPI docs ([`fd3b89c`](https://github.com/EUCANCan/variant-extractor/commit/fd3b89c995810834c13389f1ee16d0b9333f43ba)) | ||
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| * fix: Add PyPI docs ([`fd3b89c`](https://github.com/EUCANCan/variant-extractor/commit/fd3b89c995810834c13389f1ee16d0b9333f43ba)) | ||
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| ## v4.0.0 (2023-02-10) | ||
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| ### Breaking | ||
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| * fix: Match TRA to VCF specification | ||
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| BREAKING CHANGE: Translocations are no longer named TRN, but TRA instead ([`1f7dd1e`](https://github.com/EUCANCan/variant-extractor/commit/1f7dd1eb99f425e787a6d0cfb75c1641316c5b8c)) | ||
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| ### Feature | ||
| * Add empty_dataframe method ([`ebaf357`](https://github.com/EUCANCan/variant-extractor/commit/ebaf357f40f3dd1ac2e5bbd6c74615385e668e12)) | ||
| * Add to_dataframe() method ([`4e666aa`](https://github.com/EUCANCan/variant-extractor/commit/4e666aa6821f58b887feb8f013afc76060d1aaff)) | ||
| * Convert 1-length DELs to INS ([`ae6cd8c`](https://github.com/EUCANCan/variant-extractor/commit/ae6cd8ca66205a40e5e39bef06ede0949a20a0aa)) | ||
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| * feat: Add empty_dataframe method ([`ebaf357`](https://github.com/EUCANCan/variant-extractor/commit/ebaf357f40f3dd1ac2e5bbd6c74615385e668e12)) | ||
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| * feat: Add to_dataframe() method ([`4e666aa`](https://github.com/EUCANCan/variant-extractor/commit/4e666aa6821f58b887feb8f013afc76060d1aaff)) | ||
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| * feat: Convert 1-length DELs to INS ([`ae6cd8c`](https://github.com/EUCANCan/variant-extractor/commit/ae6cd8ca66205a40e5e39bef06ede0949a20a0aa)) | ||
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| ### Fix | ||
| * Match TRA to VCF specification ([`1f7dd1e`](https://github.com/EUCANCan/variant-extractor/commit/1f7dd1eb99f425e787a6d0cfb75c1641316c5b8c)) | ||
| * Fix typing Python3.6 ([`1d72f80`](https://github.com/EUCANCan/variant-extractor/commit/1d72f80f54ffb3e6db4769f4e2f3388ba96f825b)) | ||
| * Fix typing for Python3.6 ([`1648bb7`](https://github.com/EUCANCan/variant-extractor/commit/1648bb744ed911b72d421ad9340570493d8baec8)) | ||
| * Rename to breakend notation ([`2d86782`](https://github.com/EUCANCan/variant-extractor/commit/2d86782a4870376d6ab2985ff477ce72eed6dd96)) | ||
| * Print format values in the correct order ([`ee3d399`](https://github.com/EUCANCan/variant-extractor/commit/ee3d399a68601d37da9391e91261feb2d0cffc8d)) | ||
| * Fix wrong SAMPLEs in multiallelic variants ([`7fc170f`](https://github.com/EUCANCan/variant-extractor/commit/7fc170fd535b2483f8d344428a5e567148e8b4c6)) | ||
| * Fix float .2f VCF representation ([`ed34a40`](https://github.com/EUCANCan/variant-extractor/commit/ed34a40bafce79c49be4b46fe9c032478106233b)) | ||
| * Trim extra \t ([`ef55c36`](https://github.com/EUCANCan/variant-extractor/commit/ef55c36f05e3c8c3793a5d8b6989c5d304a640f2)) | ||
| * Prioritize MATEID over coords for matching breakends ([`c6d21bf`](https://github.com/EUCANCan/variant-extractor/commit/c6d21bf51246315adca68ed4763c831742d844a2)) | ||
| * Unify different filters for paired breakends ([`2407216`](https://github.com/EUCANCan/variant-extractor/commit/24072160ac4f05d8d89928df00c4fa00125bf766)) | ||
| * Change SNV length to 1 ([`dfe6463`](https://github.com/EUCANCan/variant-extractor/commit/dfe6463e018a1d0368668e091be26a27f4dcdda7)) | ||
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| ### Breaking | ||
| * Translocations are no longer named TRN, but TRA instead ([`1f7dd1e`](https://github.com/EUCANCan/variant-extractor/commit/1f7dd1eb99f425e787a6d0cfb75c1641316c5b8c)) | ||
| * fix: Fix typing Python3.6 ([`1d72f80`](https://github.com/EUCANCan/variant-extractor/commit/1d72f80f54ffb3e6db4769f4e2f3388ba96f825b)) | ||
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| * fix: Fix typing for Python3.6 ([`1648bb7`](https://github.com/EUCANCan/variant-extractor/commit/1648bb744ed911b72d421ad9340570493d8baec8)) | ||
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| * fix: Rename to breakend notation ([`2d86782`](https://github.com/EUCANCan/variant-extractor/commit/2d86782a4870376d6ab2985ff477ce72eed6dd96)) | ||
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| * fix: Print format values in the correct order ([`ee3d399`](https://github.com/EUCANCan/variant-extractor/commit/ee3d399a68601d37da9391e91261feb2d0cffc8d)) | ||
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| * fix: Fix float .2f VCF representation ([`ed34a40`](https://github.com/EUCANCan/variant-extractor/commit/ed34a40bafce79c49be4b46fe9c032478106233b)) | ||
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| * fix: Trim extra \t ([`ef55c36`](https://github.com/EUCANCan/variant-extractor/commit/ef55c36f05e3c8c3793a5d8b6989c5d304a640f2)) | ||
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| * fix: Prioritize MATEID over coords for matching breakends ([`c6d21bf`](https://github.com/EUCANCan/variant-extractor/commit/c6d21bf51246315adca68ed4763c831742d844a2)) | ||
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| * fix: Unify different filters for paired breakends ([`2407216`](https://github.com/EUCANCan/variant-extractor/commit/24072160ac4f05d8d89928df00c4fa00125bf766)) | ||
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| * fix: Change SNV length to 1 ([`dfe6463`](https://github.com/EUCANCan/variant-extractor/commit/dfe6463e018a1d0368668e091be26a27f4dcdda7)) | ||
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| ### Unknown | ||
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| * fix: Fix wrong SAMPLEs in multiallelic variants ([`7fc170f`](https://github.com/EUCANCan/variant-extractor/commit/7fc170fd535b2483f8d344428a5e567148e8b4c6)) | ||
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| ## v3.1.0 (2022-06-14) | ||
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| ### Feature | ||
| * Replace N with correct nucleotide if possible ([`8a260e1`](https://github.com/EUCANCan/variant-extractor/commit/8a260e10bc0f01f268a27dba3e4ed85adbc0f042)) | ||
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| * feat: Replace N with correct nucleotide if possible ([`8a260e1`](https://github.com/EUCANCan/variant-extractor/commit/8a260e10bc0f01f268a27dba3e4ed85adbc0f042)) | ||
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| ### Fix | ||
| * Remove 'None' from sample field ([`23bc5f3`](https://github.com/EUCANCan/variant-extractor/commit/23bc5f3caca4fc5114299480362f23bc6284ecb5)) | ||
| * Correctly display flag INFO values ([`bd83771`](https://github.com/EUCANCan/variant-extractor/commit/bd8377159d70eb6c75b181b0c35a04bd4508d102)) | ||
| * Fix permutation of SV variant ([`d1cad92`](https://github.com/EUCANCan/variant-extractor/commit/d1cad92800dc6e603a90800943449180700b2d09)) | ||
| * Add missing END to info str ([`3606000`](https://github.com/EUCANCan/variant-extractor/commit/36060003088c8240c4d02c733a124785822a922b)) | ||
| * Remove complex indel normalization ([`65c5007`](https://github.com/EUCANCan/variant-extractor/commit/65c5007f4c5314abeb3baadd899ac0fd334f2740)) | ||
| * Set dot for None values in sample field ([`43e4c83`](https://github.com/EUCANCan/variant-extractor/commit/43e4c831f5eaddb5ed2233b3d544070941be805d)) | ||
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| * fix: Remove 'None' from sample field ([`23bc5f3`](https://github.com/EUCANCan/variant-extractor/commit/23bc5f3caca4fc5114299480362f23bc6284ecb5)) | ||
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| * fix: Correctly display flag INFO values ([`bd83771`](https://github.com/EUCANCan/variant-extractor/commit/bd8377159d70eb6c75b181b0c35a04bd4508d102)) | ||
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| * fix: Fix permutation of SV variant ([`d1cad92`](https://github.com/EUCANCan/variant-extractor/commit/d1cad92800dc6e603a90800943449180700b2d09)) | ||
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| * fix: Add missing END to info str ([`3606000`](https://github.com/EUCANCan/variant-extractor/commit/36060003088c8240c4d02c733a124785822a922b)) | ||
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| * fix: Remove complex indel normalization ([`65c5007`](https://github.com/EUCANCan/variant-extractor/commit/65c5007f4c5314abeb3baadd899ac0fd334f2740)) | ||
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| * fix: Set dot for None values in sample field ([`43e4c83`](https://github.com/EUCANCan/variant-extractor/commit/43e4c831f5eaddb5ed2233b3d544070941be805d)) | ||
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| ## v3.0.0 (2022-04-25) | ||
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| ### Breaking | ||
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| * feat: Switch to VariantExtractor iterations through __iter__ | ||
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| BREAKING CHANGE: read_vcf() method no longer exists. Iterating through the VariantExtractor instance have the same effect. ([`b7d8e58`](https://github.com/EUCANCan/variant-extractor/commit/b7d8e5846979c696dd587ec2e747f782d0c8360c)) | ||
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| * feat: read_vcf() returns a lazy generator | ||
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| BREAKING CHANGE: VariantExtractor constructor parameter only_pass renamed to pass_only | ||
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| BREAKING CHANGE: read_vcf() no longer returns a list, but a lazy generator ([`cd7decf`](https://github.com/EUCANCan/variant-extractor/commit/cd7decf68e18f0bf73568db7ac3e5b0b317ef65d)) | ||
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| ### Feature | ||
| * Switch to VariantExtractor iterations through __iter__ ([`b7d8e58`](https://github.com/EUCANCan/variant-extractor/commit/b7d8e5846979c696dd587ec2e747f782d0c8360c)) | ||
| * Read_vcf() returns a lazy generator ([`cd7decf`](https://github.com/EUCANCan/variant-extractor/commit/cd7decf68e18f0bf73568db7ac3e5b0b317ef65d)) | ||
| * Add __str__ method to VariantRecord ([`7f3aa7d`](https://github.com/EUCANCan/variant-extractor/commit/7f3aa7d312c99c3654ac22b071c2468cb7432c6b)) | ||
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| * feat: Add __str__ method to VariantRecord ([`7f3aa7d`](https://github.com/EUCANCan/variant-extractor/commit/7f3aa7d312c99c3654ac22b071c2468cb7432c6b)) | ||
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| ### Fix | ||
| * Add dot if info is not defined ([`70fa09b`](https://github.com/EUCANCan/variant-extractor/commit/70fa09b7d7b9eef63a826db0f1749fc850a04e8d)) | ||
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| ### Breaking | ||
| * read_vcf() method no longer exists. Iterating through the VariantExtractor instance have the same effect. ([`b7d8e58`](https://github.com/EUCANCan/variant-extractor/commit/b7d8e5846979c696dd587ec2e747f782d0c8360c)) | ||
| * VariantExtractor constructor parameter only_pass renamed to pass_only ([`cd7decf`](https://github.com/EUCANCan/variant-extractor/commit/cd7decf68e18f0bf73568db7ac3e5b0b317ef65d)) | ||
| * read_vcf() no longer returns a list, but a lazy generator ([`cd7decf`](https://github.com/EUCANCan/variant-extractor/commit/cd7decf68e18f0bf73568db7ac3e5b0b317ef65d)) | ||
| * fix: Add dot if info is not defined ([`70fa09b`](https://github.com/EUCANCan/variant-extractor/commit/70fa09b7d7b9eef63a826db0f1749fc850a04e8d)) | ||
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| ## v2.1.0 (2022-04-20) | ||
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| ### Feature | ||
| * Include all information in VariantRecord ([`894763e`](https://github.com/EUCANCan/variant-extractor/commit/894763e38b5ca34abe3d909fe1cc2e738133d4f0)) | ||
| * Infer TRN brackets from pair ([`6cd0ede`](https://github.com/EUCANCan/variant-extractor/commit/6cd0edef719d8c817b071331c9a3af598925a3e4)) | ||
| * Add support for multiallelic variants ([`c763b97`](https://github.com/EUCANCan/variant-extractor/commit/c763b97b613e9cb85a98401e09888f4d5322040e)) | ||
| * Divide compound indels ([`96f72e5`](https://github.com/EUCANCan/variant-extractor/commit/96f72e51dbea136b2f1c638b6d686a57a294e187)) | ||
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| ### Fix | ||
| * Fix imprecise breakends handling ([`b2cab22`](https://github.com/EUCANCan/variant-extractor/commit/b2cab22f1dc476c9e703537f389a66b94f5a7a4c)) | ||
| * Switch regex to fullmatch ([`c554b52`](https://github.com/EUCANCan/variant-extractor/commit/c554b5247621d95a4a81470683ee668311bdfea3)) | ||
| * Fix multiallelic record handling ([`0e1620f`](https://github.com/EUCANCan/variant-extractor/commit/0e1620f4dd4d08bda18399418aa7e6dcc26feaee)) | ||
| * SVLEN not set now defaults to 0 ([`6afbb0d`](https://github.com/EUCANCan/variant-extractor/commit/6afbb0df1410859043e5645b80680763cf0f5310)) | ||
| * Fix mate_id referenced before assignment ([`5efdeca`](https://github.com/EUCANCan/variant-extractor/commit/5efdeca18f742a4c6453eb91916954ec600a78e6)) | ||
| * feat: Include all information in VariantRecord ([`894763e`](https://github.com/EUCANCan/variant-extractor/commit/894763e38b5ca34abe3d909fe1cc2e738133d4f0)) | ||
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| ### Documentation | ||
| * Fix paragraph headers ([`7dc9e9d`](https://github.com/EUCANCan/variant-extractor/commit/7dc9e9d30bd8df648ea79be2f1aaf96ecf7e1d7e)) | ||
| * feat: Infer TRN brackets from pair ([`6cd0ede`](https://github.com/EUCANCan/variant-extractor/commit/6cd0edef719d8c817b071331c9a3af598925a3e4)) | ||
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| ## v2.0.0 (2022-04-04) | ||
| ### Feature | ||
| * Add length field to VariantRecord ([`9a0e446`](https://github.com/EUCANCan/variant-extractor/commit/9a0e446a307c880221b39849b91c0c9db42b9c25)) | ||
| * Change alts to alt ([`8e1dd86`](https://github.com/EUCANCan/variant-extractor/commit/8e1dd86e8bae8094e047278a6c8fe60efb46eba6)) | ||
| * Include variant_type in VariantRecord ([`2fe8b37`](https://github.com/EUCANCan/variant-extractor/commit/2fe8b3702f1ababdb6c75290651b1f3f48f0e0a4)) | ||
| * Add `qual` field ([`4d23686`](https://github.com/EUCANCan/variant-extractor/commit/4d236869d1457c504860b9e5b482215fc45475be)) | ||
| * Remove INDEL_DEL and INDEL_INS ([`e7bbd40`](https://github.com/EUCANCan/variant-extractor/commit/e7bbd40afc84178e02372957b4060ec853e1a297)) | ||
| * Add only_pass parameter ([`39d7b41`](https://github.com/EUCANCan/variant-extractor/commit/39d7b4120ce9dd389febc273a91f970af5b8bf30)) | ||
| * Add support for SGLs ([#1](https://github.com/EUCANCan/variant-extractor/issues/1)) ([`f3621c0`](https://github.com/EUCANCan/variant-extractor/commit/f3621c0c9a6b6ea673666d61094f157a09b1acbe)) | ||
| * feat: Add support for multiallelic variants ([`c763b97`](https://github.com/EUCANCan/variant-extractor/commit/c763b97b613e9cb85a98401e09888f4d5322040e)) | ||
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| * feat: Divide compound indels ([`96f72e5`](https://github.com/EUCANCan/variant-extractor/commit/96f72e51dbea136b2f1c638b6d686a57a294e187)) | ||
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| ### Fix | ||
| * Divide INV into bracket notation ([`c18a40c`](https://github.com/EUCANCan/variant-extractor/commit/c18a40c3af15b9935150fedbe62b8bad40aa72d7)) | ||
| * Fix SGL regex ([`b58c867`](https://github.com/EUCANCan/variant-extractor/commit/b58c867597a86bddee0df72e6ee18baa1868b114)) | ||
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| * fix: Fix imprecise breakends handling ([`b2cab22`](https://github.com/EUCANCan/variant-extractor/commit/b2cab22f1dc476c9e703537f389a66b94f5a7a4c)) | ||
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| * fix: Switch regex to fullmatch ([`c554b52`](https://github.com/EUCANCan/variant-extractor/commit/c554b5247621d95a4a81470683ee668311bdfea3)) | ||
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| * fix: Fix multiallelic record handling ([`0e1620f`](https://github.com/EUCANCan/variant-extractor/commit/0e1620f4dd4d08bda18399418aa7e6dcc26feaee)) | ||
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| * fix: SVLEN not set now defaults to 0 ([`6afbb0d`](https://github.com/EUCANCan/variant-extractor/commit/6afbb0df1410859043e5645b80680763cf0f5310)) | ||
|
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| * fix: Fix mate_id referenced before assignment ([`5efdeca`](https://github.com/EUCANCan/variant-extractor/commit/5efdeca18f742a4c6453eb91916954ec600a78e6)) | ||
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| ## v2.0.0 (2022-04-04) | ||
|
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| ### Breaking | ||
| * VariantRecord.alts no longer contains a list, it has been changed to VariantRecord.alt ([`8e1dd86`](https://github.com/EUCANCan/variant-extractor/commit/8e1dd86e8bae8094e047278a6c8fe60efb46eba6)) | ||
| * read_vcf() no longer returns a tuple of VariantType and VariantRecord. It now returns a list of just VariantRecord ([`2fe8b37`](https://github.com/EUCANCan/variant-extractor/commit/2fe8b3702f1ababdb6c75290651b1f3f48f0e0a4)) | ||
| * Now INDEL_DEL and INDEL_INS are treated like DEL and INS ([`e7bbd40`](https://github.com/EUCANCan/variant-extractor/commit/e7bbd40afc84178e02372957b4060ec853e1a297)) | ||
|
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||
| ### Documentation | ||
| * Update documentation link ([`d488f34`](https://github.com/EUCANCan/variant-extractor/commit/d488f346f4ac171d7b8a54c85a3d54f58d6014ba)) | ||
| * Update docs about imprecise breakends ([`b5b7e4d`](https://github.com/EUCANCan/variant-extractor/commit/b5b7e4db8f5f7bb030cfeade323b1e7c2b90f00e)) | ||
| * Update docs with pip installation ([`d3a4a53`](https://github.com/EUCANCan/variant-extractor/commit/d3a4a5351ad9735a3feb6382ade4073a1f91a6a0)) | ||
| * feat: Change alts to alt | ||
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| ## v1.1.0 (2022-03-23) | ||
| ### Feature | ||
| * Import implementation ([`9241bc1`](https://github.com/Rapsssito/variant-extractor/commit/9241bc18298f0783718b47d10d528671ecedf30b)) | ||
| BREAKING CHANGE: VariantRecord.alts no longer contains a list, it has been changed to VariantRecord.alt ([`8e1dd86`](https://github.com/EUCANCan/variant-extractor/commit/8e1dd86e8bae8094e047278a6c8fe60efb46eba6)) | ||
|
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||
| ### Fix | ||
| * Complete the documentation ([`a2ec02b`](https://github.com/Rapsssito/variant-extractor/commit/a2ec02b9b5af3dbbf14661841a8377bf99617b07)) | ||
| * Add support for dots in bracket notation ([`37f1232`](https://github.com/Rapsssito/variant-extractor/commit/37f1232a0832e35410d0c5250a9dfdc41a361b88)) | ||
| * Fix import path ([`f1c5b99`](https://github.com/Rapsssito/variant-extractor/commit/f1c5b99e92e2af2c7263cd9d89c2ac42f97aeefd)) | ||
| * feat: Include variant_type in VariantRecord | ||
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| BREAKING CHANGE: read_vcf() no longer returns a tuple of VariantType and VariantRecord. It now returns a list of just VariantRecord ([`2fe8b37`](https://github.com/EUCANCan/variant-extractor/commit/2fe8b3702f1ababdb6c75290651b1f3f48f0e0a4)) | ||
|
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| ### Documentation | ||
| * Add documentation ([`0ae6e84`](https://github.com/Rapsssito/variant-extractor/commit/0ae6e84d8d6b52bd27b44d4b1300b6148c1ce242)) | ||
| * Extend docs ([`bcea586`](https://github.com/Rapsssito/variant-extractor/commit/bcea5867d2f3dc37ea7b6f6d72286e6d61d408b1)) | ||
| * Add initial documentation to the README ([`5ad69bf`](https://github.com/Rapsssito/variant-extractor/commit/5ad69bfb09918fa482a46b572c0c13dd0f4a1420)) | ||
| * feat: Remove INDEL_DEL and INDEL_INS | ||
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| BREAKING CHANGE: Now INDEL_DEL and INDEL_INS are treated like DEL and INS ([`e7bbd40`](https://github.com/EUCANCan/variant-extractor/commit/e7bbd40afc84178e02372957b4060ec853e1a297)) | ||
|
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||
| ## v0.1.0 (2022-03-17) | ||
| ### Feature | ||
| * Import implementation ([`9241bc1`](https://github.com/Rapsssito/variant-extractor/commit/9241bc18298f0783718b47d10d528671ecedf30b)) | ||
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| * feat: Add length field to VariantRecord ([`9a0e446`](https://github.com/EUCANCan/variant-extractor/commit/9a0e446a307c880221b39849b91c0c9db42b9c25)) | ||
|
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| * feat: Add `qual` field ([`4d23686`](https://github.com/EUCANCan/variant-extractor/commit/4d236869d1457c504860b9e5b482215fc45475be)) | ||
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| * feat: Add only_pass parameter ([`39d7b41`](https://github.com/EUCANCan/variant-extractor/commit/39d7b4120ce9dd389febc273a91f970af5b8bf30)) | ||
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| * feat: Add support for SGLs (#1) ([`f3621c0`](https://github.com/EUCANCan/variant-extractor/commit/f3621c0c9a6b6ea673666d61094f157a09b1acbe)) | ||
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| * feat: Import implementation ([`8a676e7`](https://github.com/EUCANCan/variant-extractor/commit/8a676e78939c555c157f6090cafa74581d3b1d52)) | ||
|
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||
| ### Fix | ||
| * Fix import path ([`f1c5b99`](https://github.com/Rapsssito/variant-extractor/commit/f1c5b99e92e2af2c7263cd9d89c2ac42f97aeefd)) | ||
|
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||
| ### Documentation | ||
| * Add initial documentation to the README ([`5ad69bf`](https://github.com/Rapsssito/variant-extractor/commit/5ad69bfb09918fa482a46b572c0c13dd0f4a1420)) | ||
| * fix: Divide INV into bracket notation ([`c18a40c`](https://github.com/EUCANCan/variant-extractor/commit/c18a40c3af15b9935150fedbe62b8bad40aa72d7)) | ||
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| * fix: Fix SGL regex ([`b58c867`](https://github.com/EUCANCan/variant-extractor/commit/b58c867597a86bddee0df72e6ee18baa1868b114)) | ||
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| * fix: Complete the documentation ([`fbe5c4d`](https://github.com/EUCANCan/variant-extractor/commit/fbe5c4dbfe7df1c9fd17a06637cb76e086236add)) | ||
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| * fix: Add support for dots in bracket notation ([`e4dc00b`](https://github.com/EUCANCan/variant-extractor/commit/e4dc00bbd634ff7e9f343a43c365202ac02dbcc1)) | ||
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| * fix: Fix import path ([`a9db147`](https://github.com/EUCANCan/variant-extractor/commit/a9db147fe778cca3c8bc8e7a7e68cff9063ccd4a)) |
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| # MIT License | ||
| from .VariantExtractor import VariantExtractor | ||
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| __version__ = '4.0.6' | ||
| __version__ = '4.0.7' | ||