chore: Add ONCOLINER citation #22
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| name: Semantic Release | |
| on: | |
| push: | |
| branches: | |
| - main | |
| jobs: | |
| release: | |
| runs-on: ubuntu-latest | |
| concurrency: release | |
| environment: | |
| name: pypi | |
| url: https://pypi.org/p/variant-extractor | |
| permissions: | |
| id-token: write # IMPORTANT: this permission is mandatory for trusted publishing | |
| contents: write | |
| outputs: | |
| released: ${{ steps.release.outputs.released }} | |
| version: ${{ steps.release.outputs.version }} | |
| steps: | |
| - uses: actions/checkout@master | |
| with: | |
| fetch-depth: 0 | |
| - name: Python Semantic Release | |
| id: release | |
| uses: python-semantic-release/[email protected] | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Publish package distributions to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| # The following line is required to ensure that the package is only published to PyPI when a new version is released. | |
| # NOTE: DO NOT wrap the conditional in ${{ }} as it will always evaluate to true. | |
| # See https://github.com/actions/runner/issues/1173 | |
| if: steps.release.outputs.released == 'true' | |
| - name: Publish package distributions to GitHub Releases | |
| uses: python-semantic-release/[email protected] | |
| if: steps.release.outputs.released == 'true' | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| tag: ${{ steps.release.outputs.tag }} | |
| build_docs: | |
| needs: release | |
| if: needs.release.outputs.released == 'true' | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| steps: | |
| - id: deployment | |
| uses: sphinx-notes/pages@v3 | |
| with: | |
| publish: false | |
| documentation_path: './docs/source' | |
| requirements_path: './requeriments_docs.txt' | |
| - uses: peaceiris/actions-gh-pages@v4 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ${{ steps.deployment.outputs.artifact }} |