update to latest mom6_bathy #14

	# This workflow will install CESM, create visualCaseGen conda env, and run all CI tests.

	name: visualCaseGen CI

	on:
	push:
	branches: [ "main", "ci" ]
	pull_request:
	branches: [ "main", "ci" ]

	jobs:
	ci_tests:
	name: visualCaseGen CI tests
	runs-on: "ubuntu-latest"
	defaults:
	run:
	shell: bash -el {0}
	steps:

	- name: Install xmllint
	run: sudo apt-get install -y libxml2-utils

	# clone CESM
	- uses: actions/checkout@v4
	with:
	repository: alperaltuntas/CESM
	ref: cesm2_3_alpha17b_gui
	#submodules: recursive

	# Run manage_Externals
	- name: checkout CESM
	run: \|
	./manage_externals/checkout_externals -o

	# set up conda
	- uses: conda-incubator/setup-miniconda@v3

	# visualCaseGen conda env
	- name: Create visualCaseGen conda env
	run: \|
	cd visualCaseGen/
	conda env create --file environment.yml
	conda activate visualCaseGen

	# Run all tests
	- name: Run tests
	env:
	CIME_MODEL: "cesm"
	CIME_DRIVER: "nuopc"
	CIME_TEST_PLATFORM: ubuntu-latest
	run: \|
	export SRC_PATH="${GITHUB_WORKSPACE}"
	mkdir -p /home/runner/cesm/scratch
	cd visualCaseGen/
	conda activate visualCaseGen
	pytest tests

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