Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

bug fix for DART in case_st_archive.py #1375

Merged
merged 1 commit into from
Apr 19, 2017
Merged

Conversation

bertinia
Copy link
Contributor

@bertinia bertinia commented Apr 18, 2017

bug fixes to case_st_archive.py for DART restarts and a typo fix for the output log file.

Test suite: ERR_N3_Ln9.f19_f19.F2000_DEV.yellowstone_intel.cam-outfrq9s
Test baseline: N/A
Test namelist changes: N/A
Test status: bit for bit

Fixes #1374
Fixes #1306
User interface changes?:
None
Code review:
Kevin Raeder ([email protected])

@rljacob
Copy link
Member

rljacob commented Apr 19, 2017

Who should merge this? Mark that one person as "Assigned".

@bertinia bertinia removed the request for review from mvertens April 19, 2017 18:42
@fischer-ncar fischer-ncar merged commit 5a141f8 into master Apr 19, 2017
jedwards4b added a commit to jedwards4b/cime that referenced this pull request Jun 14, 2019
6f0afaa Merge pull request ESMCI#1496 from NCAR/ejh_next_version
67253c0 changed versions
7f1ae08 changed versions
bc7091a changed versions
539b7ea Merge pull request ESMCI#1495 from NCAR/ejh_release
b323420 merged changes from master
12bee91 Merge pull request ESMCI#1493 from NCAR/ejh_docs_fix
7942185 changed version numbers
7f16cf0 fixed fortran decomp docs
ae8b174 Merge pull request ESMCI#1491 from NCAR/ejh_logging
337d32a fix error handling
b6522c4 now pio_init_logging() checks are returns error codes
c2d8426 now pio_init_logging() checks are returns error codes
a2897a0 now pio_init_logging() checks are returns error codes
2af631f Merge pull request ESMCI#1489 from NCAR/ejh_mpe
9924038 whitespace cleanup
bab1c80 added MPE to test_perf2.c
513190a Merge pull request ESMCI#1486 from NCAR/ejh_isolate_gptl
0cc7164 no longer delete docs directory
a8412c2 isolating GPTL calls
4f814ad Merge pull request ESMCI#1481 from NCAR/ejh_cleanup_2
e0b1d8a fixing CDF5 issue
7b54b3e cleanup of comments in pio_types.F90
03a2580 more cleanup for pio_types.F90
826de45 more cleanup for pio_types.F90
e4cada7 starting to clean up pio_types.F90
0bf6599 Merge pull request ESMCI#1479 from NCAR/ejh_cleanup
31a3ca0 whitespace cleanup
de73965 fixed problem attempting to remove docs directory
96bc111 Merge pull request ESMCI#1476 from NCAR/ejh_even_more_docs_2
e5190c8 Merge branch 'master' into ejh_even_more_docs_2
cf2c4a7 Merge pull request ESMCI#1475 from NCAR/ejh_even_more_docs
6a239a4 Merge branch 'master' into ejh_even_more_docs
f754949 Merge pull request ESMCI#1472 from jedwards4b/jedwards/strnlen_fix
c77ceac Merge branch 'master' into jedwards/strnlen_fix
c370336 removed unneeded prototype for removed function
4b7a1fa putting vard functions in appropriate place in docs
df1218b separated put functions into category by var/vara/var1/vars/vard for documentation
030e7d4 response to review
6de0e94 separated get functions into category by var/vara/var1/vars/vard for documentation
42a43de removed unused functions
2d3528b Merge pull request ESMCI#1470 from NCAR/ejh_vard_functions
5aeae4e clean up
daac77e redo cmake change
e69191d fix warning in intel19 strnlen implicit
4819d30 adding tests for void * versions of vard functions
e49c2b9 added rest of netcdf-4 atomic types
b7aad13 adding more netcdf-4 atomic types to test
f213355 adding netcdf-4 UBYTE type to test
d83ca72 starting to add netcdf-4 atomic type tests
f85ff96 test development
6618962 test development
341d753 moving iotype for loop
f5b5d56 moving iotype for loop
e98dff3 more tests, fixing char type
bc03efa adding more testing, fixing some type stuff
44030a2 starting to add netcdf4 types
86f8a17 adding types
9f2a33a adding types
586b09c cleanup
8114b34 cleanup
b6ea1d4 working on vard test
328afad working on vard test
2ec36c7 adding vard testing
aa26496 disallow type conversion in vard reads (for now)
b280e4a disallow type conversion in vard writes (for now)
9f84247 trying to fix cmake build
f33f309 further work on vard functions
c2a24fb more work on vard functions
ee5c7ed starting to add vard functions
f96b039 Merge pull request ESMCI#1466 from NCAR/ejh_new_free_iosystem
ac9612b Merge branch 'master' into ejh_new_free_iosystem
56cd15b Merge pull request ESMCI#1468 from NCAR/ejh_memcheck_removal
3a4af14 removed home-rolled memory checking code
d392ff9 changed examples to PIOc_free_iosystem()
9132d9f changed tests to PIOc_free_iosystem()
f3840b4 documentation changes
de57f08 moving function code for PIOc_free_iosystem()
5b652fb added PIOc_free_iosystem()
ba3e18d Merge pull request ESMCI#1465 from NCAR/ejh_doc_diagrams
8f79b6e fixed diagram in Makefile.am
76de3e1 more diagrams
6112687 adding diagrams, fixing diagrams
9b921fe more documentation improvements
09feb0e Merge pull request ESMCI#1464 from NCAR/ejh_more_docs_6
9b12c1c gettng closer!
e901b40 more documentation changes
866608a more documentation changes
7ba0816 Merge pull request ESMCI#1462 from NCAR/ejh_more_docs_4
ce207c5 Merge branch 'master' into ejh_more_docs_4
bb52636 more doc work
fe7b080 Merge pull request ESMCI#1460 from NCAR/ejh_more_docs_3
f608641 moved more defgroups to beginning of file
9bccea5 moved defgroups to top of file
9f327b3 more documentation changes
fe90e61 more docs work
ad98a0b more docs work
d282ec2 more docs work
1a1925d more docs work
54db8b2 more documentation work
f9faae9 Merge pull request ESMCI#1458 from NCAR/ejh_more_docs
5167124 more fortran doc changes
f1b72e1 fortran documentation changes
8cc123f fortran documentation cleanup
7cffdfd Merge pull request ESMCI#1454 from NCAR/ejh_even_more_docs
3765d09 more changes
81b60cc more documentation changes
0dc2f14 adding breif descriptions to defgroups
48702cd Merge pull request ESMCI#1452 from NCAR/ejh_more_docs_2
9932f6e clean up error handling page
f598b73 added iosystem.txt
1465335 Merge pull request ESMCI#1451 from NCAR/ejh_more_docs
8b24763 adding users_guide.txt
37144d9 more documentation changes
11f4828 more documentation work
54c4530 documentation work
e48b9f9 Merge pull request ESMCI#1450 from NCAR/ejh_doc_images
a7a576a added image
35561dd centralized COPYRIGHT notice
b03bee5 adding images directory
281cf23 Merge pull request ESMCI#1449 from NCAR/ejh_no_more_docs_folder
4fa0e85 removed docs
cb379e9 Merge pull request ESMCI#1448 from NCAR/ejh_check_developer_docs_in_travis
7e9209f changed --enable-docs to --enable-developer-docs
167d331 Merge pull request ESMCI#1447 from NCAR/ejh_try_3
5188bc5 documentation fix for --enable-developer-docs
abb1339 Merge pull request ESMCI#1446 from NCAR/ejh_again
ad5f1f1 added graphviz, working on fortranfree format thing
9be9905 moved more deprecated tags, working on fortranfree format thing
1949bb9 moved deprecated tag
4f9327e map f90 to FortranFree for doxygen
cfc738d map f90 to FortranFree for doxygen
332199d added doxygen
4ee91b5 now building doc
61667d2 trying to find netcdf.inc
025e7aa trusty does not let me install libnetcdff-dev
66fa92d switched back to trusty
893b9f0 adding libnetcdff-dev to travis
473c69a turning off cmake build of examples/f03
3491e45 switched to xenial dist
f833104 change to trigger CI
08d0dbc Merge pull request ESMCI#1445 from NCAR/ejh_test
09f7a51 fixed Makefile.am in doc/source
548170d change to trigger CI
74153a0 finished separating C API from Fortran API
d28b7aa more C API documentation
828cc91 more C API documentation
31ec493 C file operations
df2524b starting separate manual for C/Fortran
e2a58a2 change to trigger CI
04234a4 Merge pull request ESMCI#1441 from NCAR/ejh_docs_8
fafbaea Merge branch 'master' into ejh_docs_8
56c19ba Merge pull request ESMCI#1440 from NCAR/ejh_docs_7
bb15b50 cause make check to build documentation and check for warnings
22ebc9f fixed last of dixygen warnings, now documentation build fails if there are warnings
2103f65 Merge branch 'master' into ejh_docs_7
6b4dcc2 fixed documentation error
c6a2a3e merged ejh_docs_7
561eb3d preprocessing F90 files for doxygen
615e4c8 more documentation fixes
b5e97d5 more documentation fixes
29cac1e Merge pull request ESMCI#1439 from NCAR/ejh_docs_6
cd4b080 Merge branch 'master' into ejh_docs_6
2c20802 Merge pull request ESMCI#1438 from NCAR/ejh_docs_5
596ee10 more documentation fixes
6dd156c merged ejh_docs_5
298090c Merge pull request ESMCI#1435 from NCAR/ejh_docs_4
d6acd33 more documentation fixes
05e3081 more documentation improvements
26b530f added --enable-developer-docs option to configure
dc60db6 last of doxygen warnings for C library
527b999 documentation fixes
52ac338 Merge pull request ESMCI#1434 from NCAR/ejh_docs_3
883f2d0 removed unused prototype
361d809 removed unused prototype
ad1bac6 documentation imrprovements
60417c2 more documentation improvements
5756c8e more documentation fixes
cb942bb documentation improvement
bf1c58c Merge pull request ESMCI#1433 from NCAR/ejh_docs_2
fdfeecd Merge branch 'master' into ejh_docs_2
b0483f2 Merge pull request ESMCI#1432 from NCAR/ejh_docs
977095f more documentation
d80d0d6 more documentation fixes
5db51a6 fixing documentation
d22a00c more documentation and warning fixes
6fe3aed documentation fixes
5551321 documentation fixes
a91e4f3 Merge pull request ESMCI#1430 from NCAR/ejh_genf90_2
966279a cleanup
643234f now generating F90 files from .in files with genf90.pl
62b859f now generating F90 files from .in files with genf90.pl
81aedfa Merge pull request ESMCI#1429 from NCAR/ejh_genf90
74d7c47 added genf90.pl
917827d now generate pionfatt_mod.F90 from pionfatt_mod.F90.in in autotools build
5653a48 now generate pionfatt_mod.F90 from pionfatt_mod.F90.in in autotools build
4fdfef2 now generate pionfatt_mod.F90 from pionfatt_mod.F90.in in autotools build
b813b60 now generate pionfatt_mod.F90 from pionfatt_mod.F90.in in autotools build
e7ea53f removed genf90.pl
dea5c70 added scripts directory
37be328 Merge pull request ESMCI#1428 from NCAR/ejh_perf_5
70bff1d changed size of data to fit memory
514988d make writes really async?
3cb4c6b merged master
2c5ef5a Merge pull request ESMCI#1426 from NCAR/ejh_more_changes_from_PR
a3495e7 combined check_mpi() and check_mpi2()
dd4fbbb perf program changes
af3cab2 Merge pull request ESMCI#1419 from NCAR/ejh_max_name
b1d38e3 changes as suggested by Jayesh
9e6115f changes as suggested by Jayesh
230fadd Merge pull request ESMCI#1416 from NCAR/ejh_perf_4
7c58bf2 added development to version
7b05637 perf test development
a75df83 perf test development
a074378 perf test development
fd16161 perf test development
adf2b3e perf test development
e70aed5 made data smaller
0c40d0b changed comment
4a57b6c Merge pull request ESMCI#1415 from NCAR/ejh_perf_3
98ee55a more perf test development
618833c adding async perf test
624ca79 adding async perf test
229d05d adding async perf test
84634cd adding async perf test
36b0e33 adding async perf test
f265ff8 adding async perf test
ffad703 adding async perf test
3e333c9 adding async perf test
21229d9 Merge pull request ESMCI#1414 from wkliao/fix_my_proc_list
c84b201 Merge pull request ESMCI#1412 from NCAR/ejh_lt_init
82f1b7e bug fix: allocate my_proc_list after checking component_count
cb217dc changed AC_PROG_LIBTOOL to LT_INIT
bd08dcc Merge pull request ESMCI#1405 from NCAR/ejh_perf_2
29ff099 turned on test_async_manyproc
f7cafe7 made pioperf run faster
b15f88a more changes to test_perf2.c
991f34b changes to test_perf2
1ab5839 changes to test_perf2
4045cd5 changes to test_perf2
eb49aa9 changes to test_perf2
72ce726 Merge pull request ESMCI#1404 from NCAR/ejh_docs1
e680dcb modified doxyfile to include all C source
6005e85 doc fixes, performance program fixes
70518f4 Merge pull request ESMCI#1403 from NCAR/ejh_docs1
59b88bc fixed warning
0f9122e fixe codacity warning
080fe0a fixed codacy warnings
cbf0a48 returned docs directory
f395aa9 changed example
6d7a936 more doc fixes
5030bf3 more doc fixes
3f0112f updated README
4e1897e fixed docs
7d33589 fixed docs
a4be8eb Merge pull request ESMCI#1400 from NCAR/ejh_test
7d4f6eb updated docs for github pages
af8adf0 change to trigger CI
1ff5c4e updating version info for new release
748255b update cdash builds to use master not develop
cf1764e Merge pull request ESMCI#1397 from NCAR/ejh_turn_off_tests
1640c98 allow tests to be built but not run
a29460e Merge pull request ESMCI#1395 from NCAR/ejh_perf_doc
8976ba8 cleaned up docs
0b2d445 more work on getting pioperformance working on theia
9b8bafb bumped version and also added more doc for pioperformance
e207ef0 improved pioperf documentation
ca6b558 automated test for pioperformance
a8905ee more work on pioperformance
cd22cf4 adding some documentation
94e2405 Merge pull request ESMCI#1388 from jedwards4b/box_optimization
077be41 clean up
63717b2 Merge pull request ESMCI#1393 from NCAR/ejh_pioperformance
cce2306 fixing HAVE_PAPI automake conditional
08de2ed now getting pioperfornace to build!
b5c31df more work on pioperformance
93d0298 more progress on pioperformance
ba3e0d6 adding timing to autotools build
9cab9b2 fix spelling error in comment
ed840ec Adding "inline" to idx_to_dim_list() and coord_to_lindex()
1228cb7 Optimizing box_rearrange_create on index conversion
deb68f1 optimizing some code
44c8819 correct expected result
ee2ed3e optimizing some code
a936f8f Merge pull request ESMCI#1391 from jedwards4b/msg_overwrite_fix
db941b1 rephrase for clarity
fe72532 need unique space for each message sender
3b570ff switch cmake build to use malloc not bget by default
a5b9293 Merge pull request ESMCI#1387 from NCAR/ejh_version
73a20fb Merge branch 'master' into ejh_version
d250ef2 Merge pull request ESMCI#1385 from NCAR/ejh_autotools_docs
162d119 changed version
496d343 Merge pull request ESMCI#1386 from NCAR/ejh_perf
3f28eed changes
8ba35c2 changs to performance measuring program
e723238 now build docs for autotools build
2402895 more work on performance program
3598cb5 changes in test_perf2
2882bb9 Merge pull request ESMCI#1383 from NCAR/ejh_more_codacy
5f5ce5d Merge pull request ESMCI#1382 from NCAR/ejh_next
9b2ffde fixed more codacy warnings
cf96820 more codacy fixes
04c33a0 fixed more codacy warnings
9027cff fixed more codacy warnings
5ebede5 fixed some codacy warnings
e6e14df fixed some codacy warnings
93b963d more codacy warnings
55165df fix for codacy warning
5a9c0ef Merge pull request ESMCI#1379 from NCAR/ejh_next_fix_3
8a095f1 Merge pull request ESMCI#1381 from NCAR/ejh_perf2
8cd99d9 moved memory use from stack to heap
4c67551 moved memory use from stack to heap
65202a2 working on performance test
437541a more codacy fixes
c13e689 more codacy fixes
2c58077 more codacy warning fixes
0eff1f1 fixed codacy warnings
0f52ba4 fixed codacy warnings in test_decomp_frame.c
5c1fa0e Merge pull request ESMCI#1378 from NCAR/ejh_fortran_build
b0b28e8 Merge pull request ESMCI#1377 from NCAR/ejh_fix_codacy
00212e5 fixed run_test scripts
f7921f8 trying to fix codacy warning
249246f added tests/general *.in files to EXTRA_DIST
e0501c3 fixed Makefile.am typo
0c22124 fixing missing pio_tutil.F90 file
5e1eef0 readded tests/general/util/Makefile.am
e334e14 readded tests/general/util/Makefile.am
1c0464b now generating F90 files in tests/general
90130cb fixes for make distcheck build with --enable-fortran
7605f58 fixing use of tests/unit/input.nl with distcheck
b77dad0 fixing use of tests/unit/input.nl with distcheck
0cf92fb fixing use of tests/unit/input.nl with distcheck
ce7416e added FCFLAGS to travis
58fccb6 turning on --enable-fortran in DISTCHECK_CONFIGURE_FLAGS for travis
956f28f now move pio_tutil to tests/general dir during configure
5ed762b working on fortran tests
0d53ff7 working on fortran tests
729d7fa merged master
a59ab5e fixed codacy warning in pioc_support.c
6f5ecda fixing codacy warning in test_rearr.c
dd0e973 fixing codacy warning in test_rearr.c
0725be7 Merge pull request ESMCI#1376 from NCAR/ejh_next_fix_2
feae14a Merge pull request ESMCI#1375 from NCAR/ejh_next_fix
71d46ce working on fortran autotools build
3f65d1b turning off parallel build in test/general
654da51 turning off parallel build in test/unit
b26d031 fixing fortran build in autotools
d497232 added tests/general/util/Makefile.am
f301384 added fortran to travis autotools build
9153947 fixing fortran tests in autotools build
d6b257e more fortran tests
e8b3350 more fortran tests in autotools build
654bcb7 working on fortran tests in autotools build
dbaa196 getting fortran tests working
00524dc more work on fortran tests in autotools
112804c working on general fortran tests
f6b85f6 getting fortran tests working
b5054f6 getting fortran tests working
d01847e merged master
eed88a7 fixed memory leak on error warning from codacy
ed7a0ee fixed memory leak on error warning from codacy
b9259f3 fixed use of uninitialized variable in topology.c
f0f128a fixed incorrect use of file before it was set in pio_msg.c
b5b0ca6 changed error code
28185db working on memory warning in test_rearr.c
3422b55 working on memory warning in test_rearr.c
c2c8d29 fixed memory leak warning in test_rearr.c
92ab215 fixed memory leak warning in test
42ec250 Merge pull request ESMCI#1374 from NCAR/ejh_travis_asan
0140312 Merge pull request ESMCI#1373 from NCAR/ejh_bug_fix2
7b9cc47 merged ejh_bug_fix2
31c64d0 turning on asan for cmake build in travis
f70ce39 fixed remap memory leak
e55de31 fixed memory problem in logging statement
75da528 fixed warning in test_darray_multivar3.c
f7ac2b0 fixed warning in test_darray_multi.c
938680d fixed warning in test_perf2.c
8dd4fdc more fortran flags, plus fix warning
b1cbbba adding set_flags.am
3a34128 added Makefile.am in tests/general which does noting
f798cd2 merged master
5596b4d Merge pull request ESMCI#1370 from NCAR/ejh_bug_fix
2e44db6 getting fortran tests working
5c139b0 starting to add fortran tests
a13a100 initial fortran build working
4e37d6e merged ejh_bug_fix
64496c8 fixed warnings
c45425d merged ejh_bug_fix branch
0d3556e for travis, only address sanitize autotools build
26ae9db travis with address sanitizer
7e799c7 turned on address sanitizer in travis
154dc95 fixed memory leaks
cd1d9cf fixing leak on error
a240cab fixing codacy warnings in test
27a8638 clean up of test_perf2.c
63abea0 change to trigger CI
3289961 Merge pull request ESMCI#1363 from NCAR/ejh_minor
1a541d8 Merge pull request ESMCI#1365 from NCAR/ejh_require_pnetcdf
13c1bc1 Merge pull request ESMCI#1367 from NCAR/ejh_warnings
38e16a2 Merge pull request ESMCI#1366 from NCAR/ejh_more_codacy
48a4923 fixed fscan warnings
79a0e58 removed redundant test_perf1.c
fe1019e added some timing to test_perf2.c
b996ca4 add --disable-pnetcdf configure option and require it if pnetcdf is not found
0869129 removed unused var
cffcd55 fixed memory leak on error
b58ac3f removed unused var in test
88c4201 fixed missing initializations in pio_msg.c
8b2952f fixed shell script warnings
544f6c7 Merge pull request ESMCI#1357 from NCAR/ejh_fix_codacy_3
ef653a6 rolling back to most recent working travis build for reasons of mental health
bcbcaae switched back to pnetcdf 1.11.0
524c5c9 working on fortran build
84f1284 getting fortran build working
9e9ea92 progress on fortran autotools build
ebaf86e more fortran build
badb9e2 starting to add fortran build
dcc8bd4 starting to add fortran build to autotools
37eb88a removed cmake build in travis
2739c71 dorking around with cmake build in travis and cursing cmake
b4e8d5f switched to pnetcdf 1.10
5ec13ea switched to pnetcdf 1.10
9b182c5 switched to HDF5 1.10.4
fdd9b6e Merge pull request ESMCI#1358 from jedwards4b/type_size_fix
6a9a3ff minor bug fix in fortran interface
67f44d9 now build netcdf-4 from source in travis
11c1e92 cleaning up travis script
0b499b9 fixing over-sensitive error string test_pioc.c
01f1cb9 fixing over-sensitive error string test_pioc.c
fa5a046 fixing over-sensitive error string test_pioc.c
f99b500 trying to install shared library pnetcdf
52915d4 trying to install shared library pnetcdf
02b1346 trying to install pnetcdf
2c73319 trying to limit travis to pr build only
0c8d71d more work on travis build
2cf6a29 more work on travis build
10fa1ff more work on travis build
0923e21 more work on travis build
4a6b779 more travis work
849ed55 Merge pull request ESMCI#1342 from jedwards4b/hashtables
c9d014e trying cmake build in travis
65c08f6 revert this change
8e5dc56 trying cmake build in travis
ed8b6e4 some mpis dont allow MPI_DATATYPE_NULL in MPI_Type_size
a1f439a trying cmake build in travis
30ce045 trying cmake build in travis
733a15a trying cmake build in travis
c1efe46 trying cmake build in travis
051ffbf trying cmake build in travis
ebdfa77 trying cmake build in travis
0be3522 trying cmake build in travis
f28f46f Merge pull request ESMCI#1353 from NCAR/ejh_test_ci_3
0062a18 improve sorting scheme
72a0cf5 fixed codacy warning
0f7b828 update cheyenne modules
f4884a7 add uthash.h to Makefile.am
f56b569 no need to initialize here
2ed2e97 more cleanup
e73bb95 cleanup
0ac12de move varlist to hash
23d71d3 replace linked list with hash lookup
ebd44d3 Merge pull request ESMCI#1349 from NetCDF-World-Domination-Council/ejh_travis1
c0e6b25 fixed warning
f4a1480 fixed warning
a0e3d04 fixed warning
fcc89c4 fixed warning
0802b58 fixed warning
3988a50 fixed warning
50afb52 fixed warning
70e0e45 fixed warning
793a786 fixed warning
f5365ab fixed warning
649ddc9 fixed warning
f971884 changing travis file
7587cf6 change to trigger travis
19773d5 Merge pull request ESMCI#1345 from NCAR/ejh_travis
6f08d49 added travis file
1a5f3ed Merge pull request ESMCI#1343 from NCAR/ejh_benchmark
cf8fecf making some changes suggested by codacy
bfd150e fixed memory leak
74d5da5 fixed memory leak
d85c2b7 fixed memory leak
fc2fc45 converting to malloc instead of VLAs to move from stack to heap
163da37 starting to put map array allocations on heap with alloc instead of VLAs
933f426 starting to put map array allocations on heap with alloc instead of VLAs
dc20149 starting to put map array allocations on heap with alloc instead of VLAs
a6025c8 starting to put map array allocations on heap with alloc instead of VLAs
8f37cda starting to put map array allocations on heap with alloc instead of VLAs
d4b6831 added to cmake but commented out
91b9b3b added another performance test
f87b5e6 added logging
52998c2 benchmark development
1f9f218 benchmark development
f4e962b benchmark development
7cccd5e benchmark development
0727181 remove tar files from repo
e5c2b61 working on time output
34331ce moving for-loops out of test_perf1() function
85b9961 working with time
2c5acc9 fixed indents
91c3ae8 took out fill mode testing
6ba8a3c working with timing
cc35519 working with timing
0c390bf Merge pull request ESMCI#1335 from jedwards4b/support_type_conversion
ff6c885 fix issue raised in codacy
72cf15a add new error type, change a test
9427840 removed 2d decomp
4ce3704 added some delay
bff9aa8 added capability for multiple vars
ec228ca further test development
702ac8e more perf test development
da90671 got working with one var
9b42613 test development
fdbcce5 now writing with 3D decomposition
299c256 more test work
d198da1 more test work
824864d more test work
fb5fb05 more test work
cfabb5c more test work
9db86c1 took out tests of bad parameters
55887b8 fix the fillvalue in test
e41d24f add some tests
bffeeb9 remove restrictions to data conversion
8bf9c52 merged master
6e3be58 added mailing list to README
fd5865a regenerated
f39290b added more files
b89700e 2.4.0 build of docs
bd60aa9 added docs directory
e090614 Merge pull request ESMCI#1330 from NCAR/ejh_remove_use_only_mpi_scatter
ddef8e9 Merge pull request ESMCI#1333 from NCAR/ejh_fix_pio_version_number_cmake
080baff changed pio version to 2.4.0 in cmake
4978d60 removed mpi_scatter from only clause of use statement, which causes gfortran to error
d77683e Merge pull request ESMCI#1327 from NCAR/ejh_dumb_null_bug
ee30e09 changed version in autotools to 2.4.0
04c6110 finally fixed NULL stride issues
254b32e fixed test
85637da fixed bug
630d32f modifying performance test
c4be8d7 modifying performance test
e5b74d1 fixed warnings in pioc.c
a94caac changing name, adding timing
0488aed starting to add performance tests
130c564 Merge pull request ESMCI#1321 from NCAR/add_pnetcdf_types
5724414 modify to address issue 1314
e062f76 fix issue in sorting and add test to catch it
bb6137e increase MPI_TYPE_DEPTH
bf6a987 modify test and update pgi test for cheyenne
317963f Merge pull request ESMCI#1319 from NCAR/develop
56dcee4 Merge branch 'trytosort' into develop
2196994 add a test
205567f still working on it
b4be30d update pgi test
415fcc1 try fixing the right file
9ee227c fix syntax
0ba25df fix syntax
4bc9b01 clean up ctest scripts
fbd27d8 update sitename
3878280 update cheyenne gnu build
e77b2cf remove debug print statements
6bbc245 working now I think
87e57b5 better but still has issues
8061b90 try to sort arrays - not working yet
96e562f Merge pull request ESMCI#1311 from NESII/skip-pkgcomp-overload
29196d0 Do not overload user-defined PKGCOMPs
4091da5 Merge pull request ESMCI#1308 from t-brown/master
66a498e Bugfix to the MPI_HAS_MPIIO check.
2f0fb4a Merge pull request ESMCI#1306 from wkliao/vard_multi_var
cad03a9 concatenate filetypes of multiple variables for vard API
7080803 skip creating an MPI derived datatype if a request is contiguous
cfd66c6 Merge pull request ESMCI#1300 from wkliao/patch-2
e8bd1b2 free an MPI communicator
a018098 Merge pull request ESMCI#1299 from NCAR/ejh_back_5
cb2cffd removed redeclaration of ret
8402f42 added documentation
e9854d6 fixed problem with _FillValue
6d2fda3 changing fill value handling in write_darray
85e008b Merge pull request ESMCI#1296 from NCAR/ejh_back2
3e80380 now run examples from autotools build as well
efd9b10 Merge pull request ESMCI#1294 from NCAR/ejh_back
8405ee0 Merge pull request ESMCI#1293 from NCAR/ejh_docs
1ec8fea clean up
c3b9d9d added documentation
5a9074a clean up
054da32 merged master
5de746f test
8b50911 test development
5395f97 test development
cfc45a6 test development
2c3aa55 test development
4f08d2d test development
2c02644 test development
661ebcd test development
e0ba296 test development
53450db test development
e538c25 test development
65c34cd test development
50a2005 test development
c42c550 test development
60e98ee test development
1642ce2 test development
435aff2 test development
1b18922 test development
5e38842 fixed iotype problem
77f73c6 Merge pull request ESMCI#1292 from NCAR/ejh_logging
e38c997 changed README
77b720f working on test
f82e4e3 cleaned up logging statements
188b8df added some logging statements
b23f6f1 added test
3fc7ce8 change to trigger build
377413b Merge pull request ESMCI#1288 from jedwards4b/get_vard
70f0c64 work toward runtime vard switch
c8cff06 fixes for vard and nag
d513eac cleanup
38230b3 working now
3189787 test_darray works
ea0f97c bug fixes
aac1aa0 add for get_vard
576a1b4 comply with MPI standard in usage of MPI_IN_PLACE
4836393 Merge pull request ESMCI#1285 from jedwards4b/add_pnetcdf_vard2
04b00aa replace changed parameter
6aa16c2 all tests pass with and without PIO_USE_PNETCDF_VARD
944315f fix issue with check_netcdf
f8c9adc getting better
d1d754b fix test
37b0975 getting closer
73f0dcf not working
d5ba0b3 fix unit test
dd18710 appears to work now
3a490e6 add support for pnetcdf vard function
f28f2f3 Merge pull request ESMCI#1284 from jedwards4b/fix_nc_error_handling
d57c957 handle pnetcdf/netcdf4p errors better
7c92c48 Merge pull request ESMCI#1278 from NCAR/ejh_test_4
fda1302 now assume frame=0 for darray read if frame was not set
cc6a5fd fixed fill value problems in PIO
4e42e46 Merge pull request ESMCI#1274 from NCAR/ejh_test_3
73d2197 merged ejh_test_3
419efdb removed varm functions
bb5f72a Merge pull request ESMCI#1272 from NCAR/ejh_test_2
856f951 Merge pull request ESMCI#1273 from NCAR/ejh_fix_master
e6b38f2 undo broken warning fix
77273d2 Merge pull request ESMCI#1253 from NCAR/gnutocheyenne
01fa50a removed dead makefile.am code
c9b16c0 fixed problem with test_intercomm2.c
3e04656 got make distcheck working
b5342af properly cleaned up all files during clean
d9170b8 Merge pull request ESMCI#1261 from NCAR/ejh_warnings
496cc3a Merge pull request ESMCI#1268 from NCAR/ejh_test_1
eee0cf3 added new line at end of .gitignore file
ceed2f2 turned off verbose output in test
2158338 fixed run test script to correctly detect failure
5097578 added to gitignore
77c4219 updated version to 2.3.1
c7627bf fixed compiler warnings
a976e18 modify script for use on cheyenne
8891fc1 Merge pull request ESMCI#1252 from NCAR/cheyenne_cdash_update
5e4a1d4 reorder modules
be2d445 Merge pull request ESMCI#1250 from t-brown/master
365d729 Adding Cray Fortran specific flags.
fbc22da Merge pull request ESMCI#1247 from NCAR/maxblocksize_fix
39e4f11 more reasonable maxblock value

git-subtree-dir: src/externals/pio2
git-subtree-split: 6f0afaa
rfiorella pushed a commit to rfiorella/cime that referenced this pull request Jun 13, 2024
6f0afaa Merge pull request ESMCI#1496 from NCAR/ejh_next_version
67253c0 changed versions
7f1ae08 changed versions
bc7091a changed versions
539b7ea Merge pull request ESMCI#1495 from NCAR/ejh_release
b323420 merged changes from master
12bee91 Merge pull request ESMCI#1493 from NCAR/ejh_docs_fix
7942185 changed version numbers
7f16cf0 fixed fortran decomp docs
ae8b174 Merge pull request ESMCI#1491 from NCAR/ejh_logging
337d32a fix error handling
b6522c4 now pio_init_logging() checks are returns error codes
c2d8426 now pio_init_logging() checks are returns error codes
a2897a0 now pio_init_logging() checks are returns error codes
2af631f Merge pull request ESMCI#1489 from NCAR/ejh_mpe
9924038 whitespace cleanup
bab1c80 added MPE to test_perf2.c
513190a Merge pull request ESMCI#1486 from NCAR/ejh_isolate_gptl
0cc7164 no longer delete docs directory
a8412c2 isolating GPTL calls
4f814ad Merge pull request ESMCI#1481 from NCAR/ejh_cleanup_2
e0b1d8a fixing CDF5 issue
7b54b3e cleanup of comments in pio_types.F90
03a2580 more cleanup for pio_types.F90
826de45 more cleanup for pio_types.F90
e4cada7 starting to clean up pio_types.F90
0bf6599 Merge pull request ESMCI#1479 from NCAR/ejh_cleanup
31a3ca0 whitespace cleanup
de73965 fixed problem attempting to remove docs directory
96bc111 Merge pull request ESMCI#1476 from NCAR/ejh_even_more_docs_2
e5190c8 Merge branch 'master' into ejh_even_more_docs_2
cf2c4a7 Merge pull request ESMCI#1475 from NCAR/ejh_even_more_docs
6a239a4 Merge branch 'master' into ejh_even_more_docs
f754949 Merge pull request ESMCI#1472 from jedwards4b/jedwards/strnlen_fix
c77ceac Merge branch 'master' into jedwards/strnlen_fix
c370336 removed unneeded prototype for removed function
4b7a1fa putting vard functions in appropriate place in docs
df1218b separated put functions into category by var/vara/var1/vars/vard for documentation
030e7d4 response to review
6de0e94 separated get functions into category by var/vara/var1/vars/vard for documentation
42a43de removed unused functions
2d3528b Merge pull request ESMCI#1470 from NCAR/ejh_vard_functions
5aeae4e clean up
daac77e redo cmake change
e69191d fix warning in intel19 strnlen implicit
4819d30 adding tests for void * versions of vard functions
e49c2b9 added rest of netcdf-4 atomic types
b7aad13 adding more netcdf-4 atomic types to test
f213355 adding netcdf-4 UBYTE type to test
d83ca72 starting to add netcdf-4 atomic type tests
f85ff96 test development
6618962 test development
341d753 moving iotype for loop
f5b5d56 moving iotype for loop
e98dff3 more tests, fixing char type
bc03efa adding more testing, fixing some type stuff
44030a2 starting to add netcdf4 types
86f8a17 adding types
9f2a33a adding types
586b09c cleanup
8114b34 cleanup
b6ea1d4 working on vard test
328afad working on vard test
2ec36c7 adding vard testing
aa26496 disallow type conversion in vard reads (for now)
b280e4a disallow type conversion in vard writes (for now)
9f84247 trying to fix cmake build
f33f309 further work on vard functions
c2a24fb more work on vard functions
ee5c7ed starting to add vard functions
f96b039 Merge pull request ESMCI#1466 from NCAR/ejh_new_free_iosystem
ac9612b Merge branch 'master' into ejh_new_free_iosystem
56cd15b Merge pull request ESMCI#1468 from NCAR/ejh_memcheck_removal
3a4af14 removed home-rolled memory checking code
d392ff9 changed examples to PIOc_free_iosystem()
9132d9f changed tests to PIOc_free_iosystem()
f3840b4 documentation changes
de57f08 moving function code for PIOc_free_iosystem()
5b652fb added PIOc_free_iosystem()
ba3e18d Merge pull request ESMCI#1465 from NCAR/ejh_doc_diagrams
8f79b6e fixed diagram in Makefile.am
76de3e1 more diagrams
6112687 adding diagrams, fixing diagrams
9b921fe more documentation improvements
09feb0e Merge pull request ESMCI#1464 from NCAR/ejh_more_docs_6
9b12c1c gettng closer!
e901b40 more documentation changes
866608a more documentation changes
7ba0816 Merge pull request ESMCI#1462 from NCAR/ejh_more_docs_4
ce207c5 Merge branch 'master' into ejh_more_docs_4
bb52636 more doc work
fe7b080 Merge pull request ESMCI#1460 from NCAR/ejh_more_docs_3
f608641 moved more defgroups to beginning of file
9bccea5 moved defgroups to top of file
9f327b3 more documentation changes
fe90e61 more docs work
ad98a0b more docs work
d282ec2 more docs work
1a1925d more docs work
54db8b2 more documentation work
f9faae9 Merge pull request ESMCI#1458 from NCAR/ejh_more_docs
5167124 more fortran doc changes
f1b72e1 fortran documentation changes
8cc123f fortran documentation cleanup
7cffdfd Merge pull request ESMCI#1454 from NCAR/ejh_even_more_docs
3765d09 more changes
81b60cc more documentation changes
0dc2f14 adding breif descriptions to defgroups
48702cd Merge pull request ESMCI#1452 from NCAR/ejh_more_docs_2
9932f6e clean up error handling page
f598b73 added iosystem.txt
1465335 Merge pull request ESMCI#1451 from NCAR/ejh_more_docs
8b24763 adding users_guide.txt
37144d9 more documentation changes
11f4828 more documentation work
54c4530 documentation work
e48b9f9 Merge pull request ESMCI#1450 from NCAR/ejh_doc_images
a7a576a added image
35561dd centralized COPYRIGHT notice
b03bee5 adding images directory
281cf23 Merge pull request ESMCI#1449 from NCAR/ejh_no_more_docs_folder
4fa0e85 removed docs
cb379e9 Merge pull request ESMCI#1448 from NCAR/ejh_check_developer_docs_in_travis
7e9209f changed --enable-docs to --enable-developer-docs
167d331 Merge pull request ESMCI#1447 from NCAR/ejh_try_3
5188bc5 documentation fix for --enable-developer-docs
abb1339 Merge pull request ESMCI#1446 from NCAR/ejh_again
ad5f1f1 added graphviz, working on fortranfree format thing
9be9905 moved more deprecated tags, working on fortranfree format thing
1949bb9 moved deprecated tag
4f9327e map f90 to FortranFree for doxygen
cfc738d map f90 to FortranFree for doxygen
332199d added doxygen
4ee91b5 now building doc
61667d2 trying to find netcdf.inc
025e7aa trusty does not let me install libnetcdff-dev
66fa92d switched back to trusty
893b9f0 adding libnetcdff-dev to travis
473c69a turning off cmake build of examples/f03
3491e45 switched to xenial dist
f833104 change to trigger CI
08d0dbc Merge pull request ESMCI#1445 from NCAR/ejh_test
09f7a51 fixed Makefile.am in doc/source
548170d change to trigger CI
74153a0 finished separating C API from Fortran API
d28b7aa more C API documentation
828cc91 more C API documentation
31ec493 C file operations
df2524b starting separate manual for C/Fortran
e2a58a2 change to trigger CI
04234a4 Merge pull request ESMCI#1441 from NCAR/ejh_docs_8
fafbaea Merge branch 'master' into ejh_docs_8
56c19ba Merge pull request ESMCI#1440 from NCAR/ejh_docs_7
bb15b50 cause make check to build documentation and check for warnings
22ebc9f fixed last of dixygen warnings, now documentation build fails if there are warnings
2103f65 Merge branch 'master' into ejh_docs_7
6b4dcc2 fixed documentation error
c6a2a3e merged ejh_docs_7
561eb3d preprocessing F90 files for doxygen
615e4c8 more documentation fixes
b5e97d5 more documentation fixes
29cac1e Merge pull request ESMCI#1439 from NCAR/ejh_docs_6
cd4b080 Merge branch 'master' into ejh_docs_6
2c20802 Merge pull request ESMCI#1438 from NCAR/ejh_docs_5
596ee10 more documentation fixes
6dd156c merged ejh_docs_5
298090c Merge pull request ESMCI#1435 from NCAR/ejh_docs_4
d6acd33 more documentation fixes
05e3081 more documentation improvements
26b530f added --enable-developer-docs option to configure
dc60db6 last of doxygen warnings for C library
527b999 documentation fixes
52ac338 Merge pull request ESMCI#1434 from NCAR/ejh_docs_3
883f2d0 removed unused prototype
361d809 removed unused prototype
ad1bac6 documentation imrprovements
60417c2 more documentation improvements
5756c8e more documentation fixes
cb942bb documentation improvement
bf1c58c Merge pull request ESMCI#1433 from NCAR/ejh_docs_2
fdfeecd Merge branch 'master' into ejh_docs_2
b0483f2 Merge pull request ESMCI#1432 from NCAR/ejh_docs
977095f more documentation
d80d0d6 more documentation fixes
5db51a6 fixing documentation
d22a00c more documentation and warning fixes
6fe3aed documentation fixes
5551321 documentation fixes
a91e4f3 Merge pull request ESMCI#1430 from NCAR/ejh_genf90_2
966279a cleanup
643234f now generating F90 files from .in files with genf90.pl
62b859f now generating F90 files from .in files with genf90.pl
81aedfa Merge pull request ESMCI#1429 from NCAR/ejh_genf90
74d7c47 added genf90.pl
917827d now generate pionfatt_mod.F90 from pionfatt_mod.F90.in in autotools build
5653a48 now generate pionfatt_mod.F90 from pionfatt_mod.F90.in in autotools build
4fdfef2 now generate pionfatt_mod.F90 from pionfatt_mod.F90.in in autotools build
b813b60 now generate pionfatt_mod.F90 from pionfatt_mod.F90.in in autotools build
e7ea53f removed genf90.pl
dea5c70 added scripts directory
37be328 Merge pull request ESMCI#1428 from NCAR/ejh_perf_5
70bff1d changed size of data to fit memory
514988d make writes really async?
3cb4c6b merged master
2c5ef5a Merge pull request ESMCI#1426 from NCAR/ejh_more_changes_from_PR
a3495e7 combined check_mpi() and check_mpi2()
dd4fbbb perf program changes
af3cab2 Merge pull request ESMCI#1419 from NCAR/ejh_max_name
b1d38e3 changes as suggested by Jayesh
9e6115f changes as suggested by Jayesh
230fadd Merge pull request ESMCI#1416 from NCAR/ejh_perf_4
7c58bf2 added development to version
7b05637 perf test development
a75df83 perf test development
a074378 perf test development
fd16161 perf test development
adf2b3e perf test development
e70aed5 made data smaller
0c40d0b changed comment
4a57b6c Merge pull request ESMCI#1415 from NCAR/ejh_perf_3
98ee55a more perf test development
618833c adding async perf test
624ca79 adding async perf test
229d05d adding async perf test
84634cd adding async perf test
36b0e33 adding async perf test
f265ff8 adding async perf test
ffad703 adding async perf test
3e333c9 adding async perf test
21229d9 Merge pull request ESMCI#1414 from wkliao/fix_my_proc_list
c84b201 Merge pull request ESMCI#1412 from NCAR/ejh_lt_init
82f1b7e bug fix: allocate my_proc_list after checking component_count
cb217dc changed AC_PROG_LIBTOOL to LT_INIT
bd08dcc Merge pull request ESMCI#1405 from NCAR/ejh_perf_2
29ff099 turned on test_async_manyproc
f7cafe7 made pioperf run faster
b15f88a more changes to test_perf2.c
991f34b changes to test_perf2
1ab5839 changes to test_perf2
4045cd5 changes to test_perf2
eb49aa9 changes to test_perf2
72ce726 Merge pull request ESMCI#1404 from NCAR/ejh_docs1
e680dcb modified doxyfile to include all C source
6005e85 doc fixes, performance program fixes
70518f4 Merge pull request ESMCI#1403 from NCAR/ejh_docs1
59b88bc fixed warning
0f9122e fixe codacity warning
080fe0a fixed codacy warnings
cbf0a48 returned docs directory
f395aa9 changed example
6d7a936 more doc fixes
5030bf3 more doc fixes
3f0112f updated README
4e1897e fixed docs
7d33589 fixed docs
a4be8eb Merge pull request ESMCI#1400 from NCAR/ejh_test
7d4f6eb updated docs for github pages
af8adf0 change to trigger CI
1ff5c4e updating version info for new release
748255b update cdash builds to use master not develop
cf1764e Merge pull request ESMCI#1397 from NCAR/ejh_turn_off_tests
1640c98 allow tests to be built but not run
a29460e Merge pull request ESMCI#1395 from NCAR/ejh_perf_doc
8976ba8 cleaned up docs
0b2d445 more work on getting pioperformance working on theia
9b8bafb bumped version and also added more doc for pioperformance
e207ef0 improved pioperf documentation
ca6b558 automated test for pioperformance
a8905ee more work on pioperformance
cd22cf4 adding some documentation
94e2405 Merge pull request ESMCI#1388 from jedwards4b/box_optimization
077be41 clean up
63717b2 Merge pull request ESMCI#1393 from NCAR/ejh_pioperformance
cce2306 fixing HAVE_PAPI automake conditional
08de2ed now getting pioperfornace to build!
b5c31df more work on pioperformance
93d0298 more progress on pioperformance
ba3e0d6 adding timing to autotools build
9cab9b2 fix spelling error in comment
ed840ec Adding "inline" to idx_to_dim_list() and coord_to_lindex()
1228cb7 Optimizing box_rearrange_create on index conversion
deb68f1 optimizing some code
44c8819 correct expected result
ee2ed3e optimizing some code
a936f8f Merge pull request ESMCI#1391 from jedwards4b/msg_overwrite_fix
db941b1 rephrase for clarity
fe72532 need unique space for each message sender
3b570ff switch cmake build to use malloc not bget by default
a5b9293 Merge pull request ESMCI#1387 from NCAR/ejh_version
73a20fb Merge branch 'master' into ejh_version
d250ef2 Merge pull request ESMCI#1385 from NCAR/ejh_autotools_docs
162d119 changed version
496d343 Merge pull request ESMCI#1386 from NCAR/ejh_perf
3f28eed changes
8ba35c2 changs to performance measuring program
e723238 now build docs for autotools build
2402895 more work on performance program
3598cb5 changes in test_perf2
2882bb9 Merge pull request ESMCI#1383 from NCAR/ejh_more_codacy
5f5ce5d Merge pull request ESMCI#1382 from NCAR/ejh_next
9b2ffde fixed more codacy warnings
cf96820 more codacy fixes
04c33a0 fixed more codacy warnings
9027cff fixed more codacy warnings
5ebede5 fixed some codacy warnings
e6e14df fixed some codacy warnings
93b963d more codacy warnings
55165df fix for codacy warning
5a9c0ef Merge pull request ESMCI#1379 from NCAR/ejh_next_fix_3
8a095f1 Merge pull request ESMCI#1381 from NCAR/ejh_perf2
8cd99d9 moved memory use from stack to heap
4c67551 moved memory use from stack to heap
65202a2 working on performance test
437541a more codacy fixes
c13e689 more codacy fixes
2c58077 more codacy warning fixes
0eff1f1 fixed codacy warnings
0f52ba4 fixed codacy warnings in test_decomp_frame.c
5c1fa0e Merge pull request ESMCI#1378 from NCAR/ejh_fortran_build
b0b28e8 Merge pull request ESMCI#1377 from NCAR/ejh_fix_codacy
00212e5 fixed run_test scripts
f7921f8 trying to fix codacy warning
249246f added tests/general *.in files to EXTRA_DIST
e0501c3 fixed Makefile.am typo
0c22124 fixing missing pio_tutil.F90 file
5e1eef0 readded tests/general/util/Makefile.am
e334e14 readded tests/general/util/Makefile.am
1c0464b now generating F90 files in tests/general
90130cb fixes for make distcheck build with --enable-fortran
7605f58 fixing use of tests/unit/input.nl with distcheck
b77dad0 fixing use of tests/unit/input.nl with distcheck
0cf92fb fixing use of tests/unit/input.nl with distcheck
ce7416e added FCFLAGS to travis
58fccb6 turning on --enable-fortran in DISTCHECK_CONFIGURE_FLAGS for travis
956f28f now move pio_tutil to tests/general dir during configure
5ed762b working on fortran tests
0d53ff7 working on fortran tests
729d7fa merged master
a59ab5e fixed codacy warning in pioc_support.c
6f5ecda fixing codacy warning in test_rearr.c
dd0e973 fixing codacy warning in test_rearr.c
0725be7 Merge pull request ESMCI#1376 from NCAR/ejh_next_fix_2
feae14a Merge pull request ESMCI#1375 from NCAR/ejh_next_fix
71d46ce working on fortran autotools build
3f65d1b turning off parallel build in test/general
654da51 turning off parallel build in test/unit
b26d031 fixing fortran build in autotools
d497232 added tests/general/util/Makefile.am
f301384 added fortran to travis autotools build
9153947 fixing fortran tests in autotools build
d6b257e more fortran tests
e8b3350 more fortran tests in autotools build
654bcb7 working on fortran tests in autotools build
dbaa196 getting fortran tests working
00524dc more work on fortran tests in autotools
112804c working on general fortran tests
f6b85f6 getting fortran tests working
b5054f6 getting fortran tests working
d01847e merged master
eed88a7 fixed memory leak on error warning from codacy
ed7a0ee fixed memory leak on error warning from codacy
b9259f3 fixed use of uninitialized variable in topology.c
f0f128a fixed incorrect use of file before it was set in pio_msg.c
b5b0ca6 changed error code
28185db working on memory warning in test_rearr.c
3422b55 working on memory warning in test_rearr.c
c2c8d29 fixed memory leak warning in test_rearr.c
92ab215 fixed memory leak warning in test
42ec250 Merge pull request ESMCI#1374 from NCAR/ejh_travis_asan
0140312 Merge pull request ESMCI#1373 from NCAR/ejh_bug_fix2
7b9cc47 merged ejh_bug_fix2
31c64d0 turning on asan for cmake build in travis
f70ce39 fixed remap memory leak
e55de31 fixed memory problem in logging statement
75da528 fixed warning in test_darray_multivar3.c
f7ac2b0 fixed warning in test_darray_multi.c
938680d fixed warning in test_perf2.c
8dd4fdc more fortran flags, plus fix warning
b1cbbba adding set_flags.am
3a34128 added Makefile.am in tests/general which does noting
f798cd2 merged master
5596b4d Merge pull request ESMCI#1370 from NCAR/ejh_bug_fix
2e44db6 getting fortran tests working
5c139b0 starting to add fortran tests
a13a100 initial fortran build working
4e37d6e merged ejh_bug_fix
64496c8 fixed warnings
c45425d merged ejh_bug_fix branch
0d3556e for travis, only address sanitize autotools build
26ae9db travis with address sanitizer
7e799c7 turned on address sanitizer in travis
154dc95 fixed memory leaks
cd1d9cf fixing leak on error
a240cab fixing codacy warnings in test
27a8638 clean up of test_perf2.c
63abea0 change to trigger CI
3289961 Merge pull request ESMCI#1363 from NCAR/ejh_minor
1a541d8 Merge pull request ESMCI#1365 from NCAR/ejh_require_pnetcdf
13c1bc1 Merge pull request ESMCI#1367 from NCAR/ejh_warnings
38e16a2 Merge pull request ESMCI#1366 from NCAR/ejh_more_codacy
48a4923 fixed fscan warnings
79a0e58 removed redundant test_perf1.c
fe1019e added some timing to test_perf2.c
b996ca4 add --disable-pnetcdf configure option and require it if pnetcdf is not found
0869129 removed unused var
cffcd55 fixed memory leak on error
b58ac3f removed unused var in test
88c4201 fixed missing initializations in pio_msg.c
8b2952f fixed shell script warnings
544f6c7 Merge pull request ESMCI#1357 from NCAR/ejh_fix_codacy_3
ef653a6 rolling back to most recent working travis build for reasons of mental health
bcbcaae switched back to pnetcdf 1.11.0
524c5c9 working on fortran build
84f1284 getting fortran build working
9e9ea92 progress on fortran autotools build
ebaf86e more fortran build
badb9e2 starting to add fortran build
dcc8bd4 starting to add fortran build to autotools
37eb88a removed cmake build in travis
2739c71 dorking around with cmake build in travis and cursing cmake
b4e8d5f switched to pnetcdf 1.10
5ec13ea switched to pnetcdf 1.10
9b182c5 switched to HDF5 1.10.4
fdd9b6e Merge pull request ESMCI#1358 from jedwards4b/type_size_fix
6a9a3ff minor bug fix in fortran interface
67f44d9 now build netcdf-4 from source in travis
11c1e92 cleaning up travis script
0b499b9 fixing over-sensitive error string test_pioc.c
01f1cb9 fixing over-sensitive error string test_pioc.c
fa5a046 fixing over-sensitive error string test_pioc.c
f99b500 trying to install shared library pnetcdf
52915d4 trying to install shared library pnetcdf
02b1346 trying to install pnetcdf
2c73319 trying to limit travis to pr build only
0c8d71d more work on travis build
2cf6a29 more work on travis build
10fa1ff more work on travis build
0923e21 more work on travis build
4a6b779 more travis work
849ed55 Merge pull request ESMCI#1342 from jedwards4b/hashtables
c9d014e trying cmake build in travis
65c08f6 revert this change
8e5dc56 trying cmake build in travis
ed8b6e4 some mpis dont allow MPI_DATATYPE_NULL in MPI_Type_size
a1f439a trying cmake build in travis
30ce045 trying cmake build in travis
733a15a trying cmake build in travis
c1efe46 trying cmake build in travis
051ffbf trying cmake build in travis
ebdfa77 trying cmake build in travis
0be3522 trying cmake build in travis
f28f46f Merge pull request ESMCI#1353 from NCAR/ejh_test_ci_3
0062a18 improve sorting scheme
72a0cf5 fixed codacy warning
0f7b828 update cheyenne modules
f4884a7 add uthash.h to Makefile.am
f56b569 no need to initialize here
2ed2e97 more cleanup
e73bb95 cleanup
0ac12de move varlist to hash
23d71d3 replace linked list with hash lookup
ebd44d3 Merge pull request ESMCI#1349 from NetCDF-World-Domination-Council/ejh_travis1
c0e6b25 fixed warning
f4a1480 fixed warning
a0e3d04 fixed warning
fcc89c4 fixed warning
0802b58 fixed warning
3988a50 fixed warning
50afb52 fixed warning
70e0e45 fixed warning
793a786 fixed warning
f5365ab fixed warning
649ddc9 fixed warning
f971884 changing travis file
7587cf6 change to trigger travis
19773d5 Merge pull request ESMCI#1345 from NCAR/ejh_travis
6f08d49 added travis file
1a5f3ed Merge pull request ESMCI#1343 from NCAR/ejh_benchmark
cf8fecf making some changes suggested by codacy
bfd150e fixed memory leak
74d5da5 fixed memory leak
d85c2b7 fixed memory leak
fc2fc45 converting to malloc instead of VLAs to move from stack to heap
163da37 starting to put map array allocations on heap with alloc instead of VLAs
933f426 starting to put map array allocations on heap with alloc instead of VLAs
dc20149 starting to put map array allocations on heap with alloc instead of VLAs
a6025c8 starting to put map array allocations on heap with alloc instead of VLAs
8f37cda starting to put map array allocations on heap with alloc instead of VLAs
d4b6831 added to cmake but commented out
91b9b3b added another performance test
f87b5e6 added logging
52998c2 benchmark development
1f9f218 benchmark development
f4e962b benchmark development
7cccd5e benchmark development
0727181 remove tar files from repo
e5c2b61 working on time output
34331ce moving for-loops out of test_perf1() function
85b9961 working with time
2c5acc9 fixed indents
91c3ae8 took out fill mode testing
6ba8a3c working with timing
cc35519 working with timing
0c390bf Merge pull request ESMCI#1335 from jedwards4b/support_type_conversion
ff6c885 fix issue raised in codacy
72cf15a add new error type, change a test
9427840 removed 2d decomp
4ce3704 added some delay
bff9aa8 added capability for multiple vars
ec228ca further test development
702ac8e more perf test development
da90671 got working with one var
9b42613 test development
fdbcce5 now writing with 3D decomposition
299c256 more test work
d198da1 more test work
824864d more test work
fb5fb05 more test work
cfabb5c more test work
9db86c1 took out tests of bad parameters
55887b8 fix the fillvalue in test
e41d24f add some tests
bffeeb9 remove restrictions to data conversion
8bf9c52 merged master
6e3be58 added mailing list to README
fd5865a regenerated
f39290b added more files
b89700e 2.4.0 build of docs
bd60aa9 added docs directory
e090614 Merge pull request ESMCI#1330 from NCAR/ejh_remove_use_only_mpi_scatter
ddef8e9 Merge pull request ESMCI#1333 from NCAR/ejh_fix_pio_version_number_cmake
080baff changed pio version to 2.4.0 in cmake
4978d60 removed mpi_scatter from only clause of use statement, which causes gfortran to error
d77683e Merge pull request ESMCI#1327 from NCAR/ejh_dumb_null_bug
ee30e09 changed version in autotools to 2.4.0
04c6110 finally fixed NULL stride issues
254b32e fixed test
85637da fixed bug
630d32f modifying performance test
c4be8d7 modifying performance test
e5b74d1 fixed warnings in pioc.c
a94caac changing name, adding timing
0488aed starting to add performance tests
130c564 Merge pull request ESMCI#1321 from NCAR/add_pnetcdf_types
5724414 modify to address issue 1314
e062f76 fix issue in sorting and add test to catch it
bb6137e increase MPI_TYPE_DEPTH
bf6a987 modify test and update pgi test for cheyenne
317963f Merge pull request ESMCI#1319 from NCAR/develop
56dcee4 Merge branch 'trytosort' into develop
2196994 add a test
205567f still working on it
b4be30d update pgi test
415fcc1 try fixing the right file
9ee227c fix syntax
0ba25df fix syntax
4bc9b01 clean up ctest scripts
fbd27d8 update sitename
3878280 update cheyenne gnu build
e77b2cf remove debug print statements
6bbc245 working now I think
87e57b5 better but still has issues
8061b90 try to sort arrays - not working yet
96e562f Merge pull request ESMCI#1311 from NESII/skip-pkgcomp-overload
29196d0 Do not overload user-defined PKGCOMPs
4091da5 Merge pull request ESMCI#1308 from t-brown/master
66a498e Bugfix to the MPI_HAS_MPIIO check.
2f0fb4a Merge pull request ESMCI#1306 from wkliao/vard_multi_var
cad03a9 concatenate filetypes of multiple variables for vard API
7080803 skip creating an MPI derived datatype if a request is contiguous
cfd66c6 Merge pull request ESMCI#1300 from wkliao/patch-2
e8bd1b2 free an MPI communicator
a018098 Merge pull request ESMCI#1299 from NCAR/ejh_back_5
cb2cffd removed redeclaration of ret
8402f42 added documentation
e9854d6 fixed problem with _FillValue
6d2fda3 changing fill value handling in write_darray
85e008b Merge pull request ESMCI#1296 from NCAR/ejh_back2
3e80380 now run examples from autotools build as well
efd9b10 Merge pull request ESMCI#1294 from NCAR/ejh_back
8405ee0 Merge pull request ESMCI#1293 from NCAR/ejh_docs
1ec8fea clean up
c3b9d9d added documentation
5a9074a clean up
054da32 merged master
5de746f test
8b50911 test development
5395f97 test development
cfc45a6 test development
2c3aa55 test development
4f08d2d test development
2c02644 test development
661ebcd test development
e0ba296 test development
53450db test development
e538c25 test development
65c34cd test development
50a2005 test development
c42c550 test development
60e98ee test development
1642ce2 test development
435aff2 test development
1b18922 test development
5e38842 fixed iotype problem
77f73c6 Merge pull request ESMCI#1292 from NCAR/ejh_logging
e38c997 changed README
77b720f working on test
f82e4e3 cleaned up logging statements
188b8df added some logging statements
b23f6f1 added test
3fc7ce8 change to trigger build
377413b Merge pull request ESMCI#1288 from jedwards4b/get_vard
70f0c64 work toward runtime vard switch
c8cff06 fixes for vard and nag
d513eac cleanup
38230b3 working now
3189787 test_darray works
ea0f97c bug fixes
aac1aa0 add for get_vard
576a1b4 comply with MPI standard in usage of MPI_IN_PLACE
4836393 Merge pull request ESMCI#1285 from jedwards4b/add_pnetcdf_vard2
04b00aa replace changed parameter
6aa16c2 all tests pass with and without PIO_USE_PNETCDF_VARD
944315f fix issue with check_netcdf
f8c9adc getting better
d1d754b fix test
37b0975 getting closer
73f0dcf not working
d5ba0b3 fix unit test
dd18710 appears to work now
3a490e6 add support for pnetcdf vard function
f28f2f3 Merge pull request ESMCI#1284 from jedwards4b/fix_nc_error_handling
d57c957 handle pnetcdf/netcdf4p errors better
7c92c48 Merge pull request ESMCI#1278 from NCAR/ejh_test_4
fda1302 now assume frame=0 for darray read if frame was not set
cc6a5fd fixed fill value problems in PIO
4e42e46 Merge pull request ESMCI#1274 from NCAR/ejh_test_3
73d2197 merged ejh_test_3
419efdb removed varm functions
bb5f72a Merge pull request ESMCI#1272 from NCAR/ejh_test_2
856f951 Merge pull request ESMCI#1273 from NCAR/ejh_fix_master
e6b38f2 undo broken warning fix
77273d2 Merge pull request ESMCI#1253 from NCAR/gnutocheyenne
01fa50a removed dead makefile.am code
c9b16c0 fixed problem with test_intercomm2.c
3e04656 got make distcheck working
b5342af properly cleaned up all files during clean
d9170b8 Merge pull request ESMCI#1261 from NCAR/ejh_warnings
496cc3a Merge pull request ESMCI#1268 from NCAR/ejh_test_1
eee0cf3 added new line at end of .gitignore file
ceed2f2 turned off verbose output in test
2158338 fixed run test script to correctly detect failure
5097578 added to gitignore
77c4219 updated version to 2.3.1
c7627bf fixed compiler warnings
a976e18 modify script for use on cheyenne
8891fc1 Merge pull request ESMCI#1252 from NCAR/cheyenne_cdash_update
5e4a1d4 reorder modules
be2d445 Merge pull request ESMCI#1250 from t-brown/master
365d729 Adding Cray Fortran specific flags.
fbc22da Merge pull request ESMCI#1247 from NCAR/maxblocksize_fix
39e4f11 more reasonable maxblock value

git-subtree-dir: src/externals/pio2
git-subtree-split: 6f0afaa
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

bug in st_archive for DART Short term archiver generates invalid characters in the log files
4 participants