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Merge branch 'jgfouca/branch-for-to-acme-10-25-2017-pr' (PR #1871)
ESMCI Version: cime5.4.0-alpha.06 10/25/2017 New user interface features case.submit now supports arbitrary prerequisites Add option to define test types in query_testlists Add ability to cancel batch jobs to the system Add --baseline-root argument to case.cmpgen_baselines Use keyword-value pairs for create_clone call Changes to case control system. Fix COST_PES and TOTALPES for titan (aprun) Rename PES_PER_NODE to MAX_MPITASKS_PER_NODE. Resolve confusion between components and component classes Add support for python3! Allow certain batch systems (PBS) to pass flags to case.run/case.test via environment var Refactor queue selection, use nodemin/nodemax instead of jobmin jobmax Fix E3SM idmap check. ERR test rework. New error trap if invalid "idmap" file is present in seq_maps.rc Fix generate and compare baseline functions Add a derived variable NTASKS_PER_INST_COMP where COMP is the component name (ATM, LND, etc) New batch_env optional entry in config_batch new batch_cancel field in config_batch Fix tests for small systems. Refactor CPLHIST mode and add DATM CPLHIST topo capability Cleanup of the compvar implementation Add COMP_ROOT_DIR_ variables so that a component can be moved with the change of a single cime variable Make sure user changes to wallclock/queue are not lost New tools Rewrite of load balancing tool (from CMDV) Coupler/driver changes only run driver build namelist after first da cycle Fixes #1845 Fixes #1426 [BFB] * jgfouca/branch-for-to-acme-10-25-2017-pr: (437 commits) Fixes for 2-case building Critical bug fix correcting unicode/str confusion Add mpas rpointer fix back in Fix config mistakes in config_batch Fix archive configuration problem for acme Fix R test-opt Fix duplication of entries Minor config_machines fixup Remove extraneous logger.info and change a warning to logger.warning Make the prereq test more flexible and correct Implement a much simpler script_regression_test tests Partial implementation of the prereq test. Still need to find out a generic way of verifying that the dependant job actually depends on the other one Revert change from afterok to afterany; this should only be done if the user specifically requests it Implements the prereq argument for case.submit, allowing the user to specify jobs which should finish (not necessarily successfully) before running the current job Update ChangeLog Change case.st_archive dependency string to not include strings indicating unsupported logic. Fix cobalt depend_string. Add depend_separator field to support LSF update mpt and pnetcdf on cheyenne Update description for TOTALPES Include spare nodes in COST_PES Update ChangeLog ...
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| # cime | ||
| Common Infrastructure for Modeling the Earth | ||
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| **cime** (pronounced: seem) represents the infrastructure code for the | ||
| CIME, pronounced “SEAM”, contains the support scripts (configure, build, run, test), data models, essential | ||
| utility libraries, a “main” and other tools that are needed to build a single-executable coupled Earth System Model. | ||
| CIME is available in a stand-alone package that can be compiled and tested without active prognostic components | ||
| but is typically included in the source of a climate model. CIME does not contain: any active components, | ||
| any intra-component coupling capability (such as atmosphere physics-dynamics coupling). | ||
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| *cime* (pronounced: seem) is currently used by the | ||
| <a href="http://www2.cesm.ucar.edu">Community Earth System Model </a> | ||
| (CESM) and the <a href="https://climatemodeling.science.energy.gov/projects/accelerated-climate-modeling-energy"> | ||
| Accelerated Climate Model for Energy </a> (ACME). | ||
| *cime* providess scripts for configuration, build, and testing of | ||
| models, as well as code for data and stub models for climate components, | ||
| and a driver code for bringing all the climate components together in a single executable. | ||
| (CESM) and the <a href="https://climatemodeling.science.energy.gov/projects/energy-exascale-earth-system-model"> | ||
| Energy Exascale Earth System Model</a> (E3SM). | ||
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| # Documentation | ||
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| See <a href="http://esmci.github.io/cime">esmci.github.io/cime</a> | ||
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| # Developers | ||
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| *cime* was initially extracted from CESM as a stand-alone capability in 2015 | ||
| by members of the CSEG group at NCAR, the software engineering team of | ||
| the CESM model. The CSEG group had been developing this infrastrucure within | ||
| CESM for a number of years using NSF and DOE funding. After version 4 was released, | ||
| a joint development partnership was started with the software engineering group of | ||
| ACME, a DOE-funded project, which had branched from CESM in 2014. | ||
| Starting with development of version 5, *cime* is cooperative effort with contributions | ||
| and ownership from members of both teams. | ||
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| The following table documents the developers who have contributed to *cime*, | ||
| showing what versions of they contributed to, and with what source(s) of support. | ||
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| Name | Institution | Versions | Funding Source (for versions) | ||
| ---------|------------------|----------|---------------------- | ||
| Mariana Vertenstein | NCAR | 1 - D | NSF, DOE | ||
| Jim Edwards | NCAR | 1 - D | NSF (1-D), DOE(1-2) | ||
| Jim Foucar | SNL | 5 - D | DOE | ||
| Rob Jacob | ANL | 5 - D | DOE | ||
| Bill Sacks | NCAR | 1 - D | NSF, DOE | ||
| Andreas Wilke | ANL | 5 - D | DOE | ||
| Jason Sarich | ANL | 5 - D | DOE | ||
| Michael Deakin | SNL | 5 - D | DOE | ||
| Erich Foster | SNL | 5 - D | DOE | ||
| Alice Bertini | NCAR | 1 - D | NSF | ||
| Chris Fischer | NCAR | 5 - D | NSF | ||
| Steve Goldhaber | NCAR | 1 - D | NSF, DOE | ||
| Mike Levy | NCAR | 1 - D | NSF, DOE | ||
| Sean Santos | NCAR | 1 - 4 | NSF | ||
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| _Key: D = Current development version (i.e. still active on project)_ | ||
| ## Lead Developers | ||
| Case Control System: Jim Edwards (NCAR), Jim Foucar (SNL) | ||
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| MCT-based Coupler/Driver: Mariana Vertenstein (NCAR), Robert Jacob (ANL) | ||
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| Data Models: Mariana Vertenstein (NCAR) | ||
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| ## Also Developed by | ||
| Alice Bertini (NCAR), Tony Craig (NCAR), Michael Deakin (SNL), Chris Fischer (NCAR), Steve Goldhaber (NCAR), | ||
| Erich Foster (SNL), Mike Levy (NCAR), Bill Sacks (NCAR), Andrew Salinger (SNL), Sean Santos (NCAR), Jason Sarich (ANL), | ||
| Andreas Wilke (ANL). | ||
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| # Acknowledgements | ||
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| CIME is jointly developed with support from the Earth System Modeling program of DOE's BER office and the CESM program | ||
| of NSF's Division of Atmospheric and Geospace Sciences. | ||
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| # License | ||
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| CIME is free software made available under the BSD License. For details see the LICENSE file. |
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