migrate FATES to use the normal BGC call sequence#1959

Merged

ekluzek merged 55 commits intoESCOMP:masterfrom rgknox:clmfates-cbalance

Aug 16, 2023

+3,085-2,841

Commits on Jan 27, 2023

Mocked up the updated cbalance checking with fates
rgknox
committed

Commits on Feb 3, 2023

Incremental progress towareds converting fates-clm carbon accounting to using native calls and not EDBGCMod.
rgknox
committed

Commits on Feb 13, 2023

another incremental step towards having the native cn balancing and call sequence when fates is on
rgknox
committed

Commits on Feb 16, 2023

more incremental fates-clm mass balance checking and pathway coupling changes
rgknox
committed

Commits on Mar 1, 2023

Incremental progress towards getting fates to work with the C and N budget pathway
rgknox
committed

Commits on Mar 2, 2023

Commits on Mar 6, 2023

Commits on Mar 9, 2023

Removed various if-clauses that prevented BGC calls and initializations from proceeding with FATES on
rgknox
committed

Commits on Mar 10, 2023

Commits on Mar 13, 2023

updated fates external and the default parameter file
rgknox
committed

Commits on Mar 14, 2023

moved the use_fates broadcast earlier in the control process
rgknox
committed

Commits on Mar 15, 2023

Commits on Mar 16, 2023

cleanup of fates-bgc coupling
rgknox
committed

Commits on May 25, 2023

Commits on May 26, 2023

Updates to the build-namelist
rgknox
committed

Commits on Jun 7, 2023

Commits on Jun 8, 2023

Commits on Jun 12, 2023

Updates to the fates-clm bgc call sequence, to preserve b4b behavior in non-fates
rgknox
committed

Commits on Jun 14, 2023

various fixes for fates bgc
rgknox
committed

Commits on Jun 30, 2023

Commits on Jul 4, 2023

update to the span of columns that carbon summary variables are calculated, for b4b
rgknox
committed

Commits on Jul 5, 2023

Fixes to zeroing carbon and nitrogen summary variables
rgknox
committed

Commits on Jul 12, 2023

Commits on Jul 20, 2023

Add error check for suplnitro for FATES
ekluzek
committed

Commits on Jul 24, 2023

Commits on Jul 26, 2023

Added calls to set the litter source on restart for fates
rgknox
committed

Commits on Jul 27, 2023

Updates to nfixing during fates run
rgknox
committed

Commits on Aug 10, 2023

Moved a call to update a call to fates litter fluxes to be immediately before we fill the decomp source-sink pools
rgknox
committed

Commits on Aug 11, 2023

conflict resolutions between dev133 and clmfates-bgc
rgknox
committed

Commits on Aug 12, 2023

Provisions to satisfy nag compiler, cnveg datastructures on now allocated with 1 index 0 through 0 when fate_bgc is on, to avoid null pointers on associates
Ryan Knox
committed

Commits on Aug 14, 2023