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More cleanup of Photosynthesis chapter
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olyson committed Jul 28, 2021
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Expand Up @@ -51,7 +51,7 @@ Previous versions of CLM calculated leaf stomatal resistance using the Ball-Berr
model as described by :ref:`Collatz et al. (1991)<Collatzetal1991>` and implemented in global
climate models (:ref:`Sellers et al. 1996<Sellersetal1996>`). The Medlyn model
calculates stomatal conductance (i.e., the inverse of resistance) based on net leaf
photosynthesis, the vapor pressure deficit, and the CO\ :sub:`2` concentration at the leaf surface.
photosynthesis, the leaf-to-air vapor pressure difference, and the CO\ :sub:`2` concentration at the leaf surface.
Leaf stomatal resistance is:

.. math::
Expand All @@ -65,7 +65,7 @@ where :math:`r_{s}` is leaf stomatal resistance (s m\ :sup:`2`
photosynthesis (:math:`\mu`\ mol CO\ :sub:`2` m\ :sup:`-2`
s\ :sup:`-1`), :math:`c_{s}` is the CO\ :sub:`2` partial
pressure at the leaf surface (Pa), :math:`P_{atm}` is the atmospheric
pressure (Pa), and :math:`D_{s}=(e_{i}-e{_s})/1000` is the vapor pressure deficit at the leaf surface (kPa)
pressure (Pa), and :math:`D_{s}=(e_{i}-e{_s})/1000` is the leaf-to-air vapor pressure difference at the leaf surface (kPa)
where :math:`e_{i}` is the saturation vapor pressure (Pa) evaluated at the leaf temperature
:math:`T_{v}` , and :math:`e_{s}` is the vapor pressure at the leaf surface (Pa).
:math:`g_{1}` is a plant functional type dependent parameter (:numref:`Table Plant functional type (PFT) stomatal conductance parameters`)
Expand Down Expand Up @@ -481,8 +481,9 @@ In terms of conductance with
e_{s} =\frac{e_{a} g_{b} +e_{i} g_{s} }{g_{b} +g_{s} } .
Substitution of equation :eq:`9.36` into equation :eq:`9.1` gives an expression for stomatal
resistance (:math:`r_{s}` ) as a function of photosynthesis
Substitution of equation :eq:`9.36` into equation :eq:`9.1` gives an expression for the stomatal
resistance
(:math:`r_{s}`) as a function of photosynthesis
(:math:`A_{n}` )

.. math::
Expand All @@ -495,11 +496,11 @@ where
.. math::
:label: 9.38
a = 1
\begin{array}{l} a = 1 \\
b = -[2(g_{o} * 10^{-6} + d) + \frac{(g_{1}d)^{2}}{g_{b}*10^{-6}D_{l}}]
b = -[2(g_{o} * 10^{-6} + d) + \frac{(g_{1}d)^{2}}{g_{b}*10^{-6}D_{l}}] \\
c = (g_{o}*10^{-6})^{2} + [2g_{o}*10^{-6} + d (1-\frac{g_{1}^{2}} {D_{l}})]d
c = (g_{o}*10^{-6})^{2} + [2g_{o}*10^{-6} + d (1-\frac{g_{1}^{2}} {D_{l}})]d \end{array}
and

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