Add Cistus crispus

[ldemirdj]

Assembly review request

• ToLID: ddCisCris1
• Species: Cistus crispus
• Project: ERGA-BGE
• Affiliation: Genoscope

[erga-ear-bot]

Hi @ldemirdj, thanks for sending the EAR of Cistus crispus.
I added the corresponding tag to the PR and will contact a supervisor and a reviewer ASAP.

[erga-ear-bot]

Hi @diegomics, do you agree to supervise this assembly?
Please reply to this message only with OK to give acknowledge.

[diegomics]

Ok

[erga-ear-bot]

*****
EAR Reviewer Selection Process
Date: 2025-02-24 10:38

All Eligible Candidates:

Github ID  | Full Name      | Institution | Total Reviews | Last Review | Active | Busy | Calling Score | Adjusted Score
------------------------------------------------------------------------------------------------------------------------
DomAbsolon | Dom Absolon    | Sanger      | 3             | 2024-11-15  | Y      | N    | 1008          | 1058          
diegomics  | Diego De Panis | IZW         | 8             | 2024-10-22  | Y      | N    | 991           | 986           

Selected reviewer: Dom Absolon (DomAbsolon)
The decision was based on:
- different institution ('Sanger')
- active ('Y')
- not busy ('N')
- highest adjusted calling score in this particular selection (1058)

[erga-ear-bot]

Hi @DomAbsolon, do you agree to review this assembly?
Please reply to this message only with Yes or No by 28-Feb-2025 at 15:38 CET

[diegomics]

Quicky went through the assembly, looks nice.
I think ddCisCris1_3 @ 3,2-3,5kb should be placed in the gap at ddCisCris1_4 @ 182,35kb, right?
Let's wait for the review...

[DomAbsolon]

yes From: "erga-ear-bot[bot]" ***@***.***> Reply to: ERGA-consortium/EARs ***@***.***> Date: Monday 24 February 2025 at 10:39 To: ERGA-consortium/EARs ***@***.***> Cc: Dominic Absolon ***@***.***>, Mention ***@***.***> Subject: Re: [ERGA-consortium/EARs] Add Cistus crispus (PR #164) [EXT] Hi @DomAbsolon [github.com]<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_DomAbsolon&d=DwMFaQ&c=D7ByGjS34AllFgecYw0iC6Zq7qlm8uclZFI0SqQnqBo&r=HMo-nEncpJD-Huct-h6WEs_n6mFGlpSnfDTSEb1TwXE&m=6BQilgPSJPIiktKe2jmCPoOujR0G-ymZaxeCnUYTzV5KS2eIcoALZn0-p2VrxNzC&s=6P_3YSxFGkPGFqoLMHFNOdoPqdWAf_TVwTcejKZd-24&e=>, do you agree to review this assembly? Please reply to this message only with Yes or No by 28-Feb-2025 at 15:38 CET — Reply to this email directly, view it on GitHub [github.com]<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_ERGA-2Dconsortium_EARs_pull_164-23issuecomment-2D2678022327&d=DwMFaQ&c=D7ByGjS34AllFgecYw0iC6Zq7qlm8uclZFI0SqQnqBo&r=HMo-nEncpJD-Huct-h6WEs_n6mFGlpSnfDTSEb1TwXE&m=6BQilgPSJPIiktKe2jmCPoOujR0G-ymZaxeCnUYTzV5KS2eIcoALZn0-p2VrxNzC&s=6WRMxXxSn1GM9ebSvA8VtSoF-X-XTBmOK0suGZNTXEc&e=>, or unsubscribe [github.com]<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_notifications_unsubscribe-2Dauth_BCJBKID66J4M4DE7LOHZQJL2RLZEFAVCNFSM6AAAAABXXVDFUOVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDMNZYGAZDEMZSG4&d=DwMFaQ&c=D7ByGjS34AllFgecYw0iC6Zq7qlm8uclZFI0SqQnqBo&r=HMo-nEncpJD-Huct-h6WEs_n6mFGlpSnfDTSEb1TwXE&m=6BQilgPSJPIiktKe2jmCPoOujR0G-ymZaxeCnUYTzV5KS2eIcoALZn0-p2VrxNzC&s=UvAXhAYZotjkOZNIpcE-92-fXUjVMKRBRkO6L1vS064&e=>. You are receiving this because you were mentioned.Message ID: ***@***.***> [Image removed by sender. erga-ear-bot[bot]]erga-ear-bot[bot] left a comment (ERGA-consortium/EARs#164) [github.com]<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_ERGA-2Dconsortium_EARs_pull_164-23issuecomment-2D2678022327&d=DwMFaQ&c=D7ByGjS34AllFgecYw0iC6Zq7qlm8uclZFI0SqQnqBo&r=HMo-nEncpJD-Huct-h6WEs_n6mFGlpSnfDTSEb1TwXE&m=6BQilgPSJPIiktKe2jmCPoOujR0G-ymZaxeCnUYTzV5KS2eIcoALZn0-p2VrxNzC&s=6WRMxXxSn1GM9ebSvA8VtSoF-X-XTBmOK0suGZNTXEc&e=> Hi @DomAbsolon [github.com]<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_DomAbsolon&d=DwMFaQ&c=D7ByGjS34AllFgecYw0iC6Zq7qlm8uclZFI0SqQnqBo&r=HMo-nEncpJD-Huct-h6WEs_n6mFGlpSnfDTSEb1TwXE&m=6BQilgPSJPIiktKe2jmCPoOujR0G-ymZaxeCnUYTzV5KS2eIcoALZn0-p2VrxNzC&s=6P_3YSxFGkPGFqoLMHFNOdoPqdWAf_TVwTcejKZd-24&e=>, do you agree to review this assembly? Please reply to this message only with Yes or No by 28-Feb-2025 at 15:38 CET — Reply to this email directly, view it on GitHub [github.com]<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_ERGA-2Dconsortium_EARs_pull_164-23issuecomment-2D2678022327&d=DwMFaQ&c=D7ByGjS34AllFgecYw0iC6Zq7qlm8uclZFI0SqQnqBo&r=HMo-nEncpJD-Huct-h6WEs_n6mFGlpSnfDTSEb1TwXE&m=6BQilgPSJPIiktKe2jmCPoOujR0G-ymZaxeCnUYTzV5KS2eIcoALZn0-p2VrxNzC&s=6WRMxXxSn1GM9ebSvA8VtSoF-X-XTBmOK0suGZNTXEc&e=>, or unsubscribe [github.com]<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_notifications_unsubscribe-2Dauth_BCJBKID66J4M4DE7LOHZQJL2RLZEFAVCNFSM6AAAAABXXVDFUOVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDMNZYGAZDEMZSG4&d=DwMFaQ&c=D7ByGjS34AllFgecYw0iC6Zq7qlm8uclZFI0SqQnqBo&r=HMo-nEncpJD-Huct-h6WEs_n6mFGlpSnfDTSEb1TwXE&m=6BQilgPSJPIiktKe2jmCPoOujR0G-ymZaxeCnUYTzV5KS2eIcoALZn0-p2VrxNzC&s=UvAXhAYZotjkOZNIpcE-92-fXUjVMKRBRkO6L1vS064&e=>. You are receiving this because you were mentioned.Message ID: ***@***.***>

…

---------------------------------------------------------------------- The Wellcome Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA.

[erga-ear-bot]

Thanks for agreeing!
I appointed you as the EAR reviewer.
I will keep your status as Busy until you finish this review.
Please check the Wiki if you need to refresh something. (and remember that you must download the EAR PDF to be able to click on the link to the contact map file!)
Contact the PR assignee for any issues.

[DomAbsolon]

ddCisCris1_2 is telo joined. From the start to the first gam needs to break and move to the opposite end. The join does not look great but you can tell by both the tell signal and the centromere signal. The small piece at the start of _3 also needs to move to _4 as suggested by @diegomics

[ldemirdj]

Hi @diegomics and @DomAbsolon,

Thanks for your feedback. I will make the changes and regenerate the EAR report.

Best,

Lola

[erga-ear-bot]

Attention @DomAbsolon, the EAR PDF was updated.