🖌️ napari-adaptive-painting

Propagate label annotations in Napari.

Installation

You can install napari-adaptive-painting via pip:

pip install napari-adaptive-painting

Usage

• Select the plugin from the Plugins menu of Napari.
• Open an image to annotate (2D+t or 3D).
• Open, load, or create a Labels layer for annotating objects.
• Select the instance label to adaptively paint from the layer controls (tip: use the Pick mode to quickly select labels) or draw a new one (in the visible 2D plane).
• Click on Start.
• Move along the Z axis (which can also represent time). Whenever the Z plane changes, the label mask is adapted to match the new Z plane.

Known limitations

• The plugin won't work if the layers are transposed. Stick to the original layer orientation.

Contributing

Contributions are welcome. Please get in touch if you'd like to be involved in improving or extending the package.

License

Distributed under the terms of the BSD-3 license, "napari-adaptive-painting" is free and open source software.

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This napari plugin is an output of a collaborative project between the EPFL Center for Imaging and the De Palma Lab in 2024.