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update overview of available software
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trz42 authored and github-actions[bot] committed Dec 9, 2024
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2 changes: 1 addition & 1 deletion docs/available_software/data/json_data.json

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2 changes: 1 addition & 1 deletion docs/available_software/data/json_data_detail.json

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35 changes: 35 additions & 0 deletions docs/available_software/detail/Tombo.md
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Tombo
=====


Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

https://github.com/nanoporetech/tombo
# Available modules


The overview below shows which Tombo installations are available per target architecture in EESSI, ordered based on software version (new to old).

To start using Tombo, load one of these modules using a `module load` command like:

```shell
module load Tombo/1.5.1-foss-2023a
```

*(This data was automatically generated on {{ generated_time }})*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Tombo/1.5.1-foss-2023a|x|x|x|x|x|x|x|x|x|


### Tombo/1.5.1-foss-2023a

This is a list of extensions included in the module:

mappy-2.28, ont-tombo-1.5.1, pyfaidx-0.5.8
35 changes: 35 additions & 0 deletions docs/available_software/detail/rpy2.md
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rpy2
====


rpy2 is an interface to R running embedded in a Python process.

https://rpy2.github.io
# Available modules


The overview below shows which rpy2 installations are available per target architecture in EESSI, ordered based on software version (new to old).

To start using rpy2, load one of these modules using a `module load` command like:

```shell
module load rpy2/3.5.15-foss-2023a
```

*(This data was automatically generated on {{ generated_time }})*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|rpy2/3.5.15-foss-2023a|x|x|x|x|x|x|x|x|x|


### rpy2/3.5.15-foss-2023a

This is a list of extensions included in the module:

coverage-7.4.3, pytest-cov-4.1.0, rpy2-3.5.15, tzlocal-5.2
2 changes: 1 addition & 1 deletion mkdocs.yml
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Expand Up @@ -134,7 +134,7 @@ extra:
- icon: fontawesome/brands/twitter
link: https://twitter.com/eessi_hpc
# this gets auto-updated via update_generated_time.sh script run in update_available_software.yml action
generated_time: "Sat, 30 Nov 2024 at 01:42:26 UTC"
generated_time: "Mon, 09 Dec 2024 at 12:45:44 UTC"
extra_javascript:
# mermaid diagram
- https://cdn.jsdelivr.net/npm/mermaid@10/dist/mermaid.esm.min.mjs
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