Code

Development#121

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clnsmth merged 24 commits intomainEDIorg/spinneret:mainfrom developmentEDIorg/spinneret:developmentCopy head branch name to clipboardJan 17, 2025

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Commits on Nov 18, 2024

• fix: add missing parameters to annotate_workbooks

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Commits on Nov 19, 2024

• fix: prevent OntoGPT cache-related errors by clearing cache

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Commits on Nov 20, 2024

• perf: enhance OntoGPT grounding with sample size

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Commits on Nov 26, 2024

• feat: initialize benchmark testing module

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• feat: implement logging for debugging

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Commits on Nov 27, 2024

• feat: implement performance metric logging

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• refactor: replace print statements with logging

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Commits on Dec 4, 2024

• feat: implement benchmark data collection and testing

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Commits on Dec 11, 2024

• fix: correct OntoGPT command construction

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• perf: optimize OntoGPT calls using ollama_chat

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• feat: introduce temperature parameter for OntoGPT calls

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• fix: update OntoGPT templates to improve grounding

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Commits on Dec 12, 2024

• feat: enhance CURIE expansion with expanded prefix map

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Commits on Dec 13, 2024

• fix: handle multiple semicolons in CURIE expansion

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Commits on Dec 19, 2024

• feat: visualize grounding rates across OntoGPT configurations

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Commits on Dec 20, 2024

• feat: add logging to benchmark_against_standard for better insights

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• test: create test data for term-set similarity score analysis

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• feat: visualize similarity metrics by predicate

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• feat: visualize similarity metrics by configuration

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• feat: make plot writing to file optional in plot_grounding_rates

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Commits on Dec 23, 2024

• refactor: remove outdated add_dataset_annotations_to_workbook function

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Commits on Dec 28, 2024

• refactor: consolidate OntoGPT workbook annotators into a single function

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• fix: correct return logic in add_predicate_annotations_to_workbook

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Commits on Jan 17, 2025

• build: configure Read the Docs for explicit path to config.py

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