update the comment

eva_submission/nextflow/accession_and_load.nf

@@ -242,7 +242,7 @@ process accession_vcf {
     # TODO revert once accessioning pipeline properly registers structural variants
     # First grep finds the "Structural variant" reported by the accessioning process, remove the duplicates, remove the * alleles and count
     SV_IN_ACCESSION=\$(grep 'Skipped processing structural variant' ${params.logs_dir}/${log_filename}.log  | grep  -v "alternate='*'" | cut -d ' ' -f 10- | sort -u | wc -l)
-    # Second grep count the reported number of missing variants in the Accessioning report
+    # Second grep count the number of missing variants in the Accessioning report after removing the * alleles
     SV_IN_QC_REPORT=\$(grep ' variants that were not found in the accession report' ${params.logs_dir}/${log_filename}.log | sed 's/, AbstractVariant/\\n AbstractVariant/g' | grep  -v "alternate='*'" | wc -l)
     echo "SV_IN_ACCESSION \$SV_IN_ACCESSION"
     echo "SV_IN_QC_REPORT \$SV_IN_QC_REPORT"