v0.4.2

What's Changed

• EVA-3695 Save validation results in a separate yaml file by @nitin-ebi in #67

Full Changelog: v0.4.1...v0.4.2

v0.4.1

What's Changed

• Update README.md by @apriltuesday in #60
• Update conda recipe by @apriltuesday in #61
• EVA-3666 - Docker resilience by @tcezard in #62
• EVA-3672 - Add more error sorting as non-critical by @tcezard in #63
• EVA-3677 - Submission flow by @tcezard in #64
• EVA-3668: Clarify support for compressed input files by @apriltuesday in #65
• Use new version of VCF validator by @tcezard in #66

Full Changelog: v0.4...v0.4.1

v0.4

What's Changed

• EVA-3566: Clean up validation output directory by @apriltuesday in #36
• EVA-3563 remove the option of providing csv mapping through command line by @nitin-ebi in #37
• EVA-3525 update validation report by @nitin-ebi in #39
• EVA-3524: Catch and report HTTP errors by @apriltuesday in #38
• EVA-3590 update initial check for validation required or not by @nitin-ebi in #40
• EVA-3581 Add option to see all errors of all categories for a sample by @nitin-ebi in #41
• EVA-3587: Semantic metadata checks by @apriltuesday in #43
• EVA-3624: Metadata checks on existing BioSamples by @apriltuesday in #44
• EVA-3615 - Add git commit to version and version to reports by @tcezard in #47
• EVA-3227 Add file size to metadata Json by @nitin-ebi in #46
• EVA-3585 Cli documentation by @Dona094 in #45
• EVA-3620 Report metadata errors for Json directly when no spreadsheet used by @nitin-ebi in #48
• EVA-3622 - Semantic validation with Biosamples validate by @tcezard in #49
• EVA-3628 Fixes and Improvements by @tcezard in #50
• EVA-3638 - Fix reporting of assembly check errors by @apriltuesday in #51
• EVA-3636: Fixes for semantic metadata validation by @apriltuesday in #52
• EVA-3635 - Fixes from Testing by @tcezard in #53
• EVA-3263 - Shallow validation by @tcezard in #54
• EVA-3564 - Simplify metadata conversion and validation by @apriltuesday in #55
• Remove minify-html by @tcezard in #57
• EVA-3659 - Updates for testing session by @apriltuesday in #56
• EVA-3663_cli_Documentation by @Dona094 in #59

New Contributors

• @Dona094 made their first contribution in #45

Full Changelog: v0.3...v0.4

v0.3

What's Changed

• EVA-3438 - Lower log level by @tcezard in #25
• EVA-3504 - Add transcriptomics to template and schema for experiment type by @tcezard in #24
• EVA-3517 - Issues from test run by @apriltuesday in #26
• Fix upload by @apriltuesday in #27
• Updates from testing by @apriltuesday in #28
• EVA-3435 - Retrieve INSDC accession based on FASTA file and compare against metadata by @apriltuesday in #29
• EVA-3522 - Add assembly check error to HTML report. by @tcezard in #32
• EVA-3523: Propagate metadata conversion errors to top-level validation report by @apriltuesday in #31
• EVA-3553 - Calculate md5 of VCF files and add them to the JSON metadata by @tcezard in #30
• EVA - 3551 - Upload json to submit by @tcezard in #33
• EVA-3557 - Review spreadsheet template by @tcezard in #35
• EVA-3565 - Add Version by @tcezard in #34

Full Changelog: v0.2...v0.3

v0.2

What's Changed

• EVA-3478 - Validation runs only when necessary by @tcezard in #18
• EVA-3459 - New script and tests to check if sequences in fasta are from INSDC by @tcezard in #19
• EVA-3488 - Remove requirement for assembly report / other refactor by @tcezard in #20
• EVA-3502 - Allow the submission-ws URL to be updated by @tcezard in #22
• EVA-3225 - Add native execution for validation and refactor by @apriltuesday in #23
• EVA-3439 - Conda build by @apriltuesday in #21

Full Changelog: v0.1...v0.2