Debugging bwa dbs prefix

EBI-Metagenomics · Apr 12, 2024 · b784c15 · b784c15
1 parent 94ba793
commit b784c15
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/shallowmapping.nf b/workflows/shallowmapping.nf
@@ -30,7 +30,7 @@ ch_multiqc_custom_methods_description = params.multiqc_methods_description ? fil
 */
 dram_dbs          = file("$params.shallow_dbs_path/external_dbs/dram_distill_dbs", checkIfExists: true)
 sourmash_db       = file("$params.shallow_dbs_path/$params.biome/sourmash_species_representatives_k51.sbt.zip", checkIfExists: true)
-bwa_db            = file("$params.shallow_dbs_path/$params.biome/bwa_reps.fa.*", checkIfExists: true)
+bwa_db            = file("$params.shallow_dbs_path/$params.biome/bwa_reps.*", checkIfExists: true)
 pangenome_db      = file("$params.shallow_dbs_path/$params.biome/functional_profiles_DB/", checkIfExists: true)
 kegg_comp_db      = file("$params.shallow_dbs_path/$params.biome/kegg_completeness_DB/", checkIfExists: true)