Fixture/some improvements #46
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mberacochea
reviewed
Dec 17, 2024
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The output name sounds a bit odd to be. This is the one that contains the marker genes that weren't found in the bins, right?
Maybe "missing_marker_genes.csv"?
| write_table(b.state, result_table) | ||
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| if b.state["marker_set"]["quality"] != "good": | ||
| logging.debug("Quality is not good") |
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Is there a definition of "good" somwhere?
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kind of...
Line 23 in 698c32d
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I would add that to the README
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bad_quality.csvandno_placement_marker_genes.txtfor folder mode. Related to Folder mode missed results for some bins #43. I answered there what is going on.