E3SM-Project · jgfouca · Oct 7, 2021 · Sep 2, 2021 · Sep 8, 2021 · Sep 9, 2021
diff --git a/cime b/cime
diff --git a/cime_config/machines/cmake_macros/CNL.cmake b/cime_config/machines/cmake_macros/CNL.cmake
@@ -0,0 +1,18 @@
+if (NOT MPILIB STREQUAL impi)
+  string(APPEND CMAKE_OPTS " -DCMAKE_SYSTEM_NAME=Catamount")
+endif()
+string(APPEND CPPDEFS " -DLINUX")
+if (COMP_NAME STREQUAL gptl)
+  string(APPEND CPPDEFS " -DHAVE_NANOTIME -DBIT64 -DHAVE_VPRINTF -DHAVE_BACKTRACE -DHAVE_SLASHPROC -DHAVE_COMM_F2C -DHAVE_TIMES -DHAVE_GETTIMEOFDAY")
+endif()
+set(MPICC "cc")
+set(MPICXX "CC")
+set(MPIFC "ftn")
+set(MPI_LIB_NAME "mpich")
+set(MPI_PATH "$ENV{MPICH_DIR}")
+set(NETCDF_PATH "$ENV{NETCDF_DIR}")
+set(PIO_FILESYSTEM_HINTS "lustre")
+set(PNETCDF_PATH "$ENV{PARALLEL_NETCDF_DIR}")
+set(SCC "cc")
+set(SCXX "CC")
+set(SFC "ftn")
diff --git a/cime_config/machines/cmake_macros/Darwin.cmake b/cime_config/machines/cmake_macros/Darwin.cmake
@@ -0,0 +1,4 @@
+string(APPEND CPPDEFS " -DSYSDARWIN")
+if (COMP_CLASS STREQUAL cpl)
+  string(APPEND LDFLAGS " -all_load")
+endif()
diff --git a/cime_config/machines/cmake_macros/Macros.cmake b/cime_config/machines/cmake_macros/Macros.cmake
@@ -0,0 +1,39 @@
+#
+# Use this file to include the relevant macros based on
+# machine/compiler settings. This file gets copied to CASEROOT
+# and that's the one that gets included by the build system. Feel free
+# to modify this file in the CASEROOT.
+#
+cmake_policy(SET CMP0057 NEW)
+
+set(MACROS_DIR ${CASEROOT}/cmake_macros)
+
+set(UNIVERSAL_MACRO ${MACROS_DIR}/universal.cmake)
+set(COMPILER_MACRO ${MACROS_DIR}/${COMPILER}.cmake)
+set(OS_MACRO ${MACROS_DIR}/${OS}.cmake)
+set(MACHINE_MACRO ${MACROS_DIR}/${MACH}.cmake)
+set(COMPILER_OS_MACRO ${MACROS_DIR}/${COMPILER}_${OS}.cmake)
+set(COMPILER_MACHINE_MACRO ${MACROS_DIR}/${COMPILER}_${MACH}.cmake)
+
+if (CONVERT_TO_MAKE)
+  get_cmake_property(VARS_BEFORE_BUILD_INTERNAL_IGNORE VARIABLES)
+endif()
+
+# Include order defines precedence
+foreach (MACRO_FILE ${UNIVERSAL_MACRO} ${COMPILER_MACRO} ${OS_MACRO} ${MACHINE_MACRO} ${COMPILER_OS_MACRO} ${COMPILER_MACHINE_MACRO})
+  if (EXISTS ${MACRO_FILE})
+    include(${MACRO_FILE})
+  else()
+    message("No macro file found: ${MACRO_FILE}")
+  endif()
+endforeach()
+
+if (CONVERT_TO_MAKE)
+  get_cmake_property(VARS_AFTER VARIABLES)
+
+  foreach (VAR_AFTER IN LISTS VARS_AFTER)
+    if (NOT VAR_AFTER IN_LIST VARS_BEFORE_BUILD_INTERNAL_IGNORE)
+      message("E3SM_SET_MAKEFILE_VAR ${VAR_AFTER} := ${${VAR_AFTER}}")
+    endif()
+  endforeach()
+endif()
diff --git a/cime_config/machines/cmake_macros/cray.cmake b/cime_config/machines/cmake_macros/cray.cmake
@@ -0,0 +1,26 @@
+if (compile_threaded)
+  string(APPEND CFLAGS " -h omp")
+endif()
+if (DEBUG)
+  string(APPEND CFLAGS " -g -O0")
+endif()
+string(APPEND CPPDEFS " -DFORTRANUNDERSCORE -DNO_R16 -DCPRCRAY")
+set(FC_AUTO_R8 "-s real64")
+set(FFLAGS "-f free -N 255 -h byteswapio -em")
+if (compile_threaded)
+  string(APPEND FFLAGS " -h omp")
+endif()
+if (NOT compile_threaded)
+  string(APPEND FFLAGS " -M1077")
+endif()
+if (DEBUG)
+  string(APPEND FFLAGS " -g -O0")
+endif()
+set(FFLAGS_NOOPT "-O0")
+set(HAS_F2008_CONTIGUOUS "TRUE")
+set(LDFLAGS "-Wl,--allow-multiple-definition -h byteswapio")
+if (compile_threaded)
+  string(APPEND LDFLAGS " -h omp")
+endif()
+set(SUPPORTS_CXX "TRUE")
+set(CXX_LINKER "FORTRAN")
diff --git a/cime_config/machines/cmake_macros/cray_theta.cmake b/cime_config/machines/cmake_macros/cray_theta.cmake
@@ -0,0 +1,21 @@
+if (NOT DEBUG)
+  string(APPEND CFLAGS " -O1")
+endif()
+if (NOT DEBUG)
+  string(APPEND FFLAGS " -O1")
+endif()
+if (COMP_NAME STREQUAL eam)
+  string(APPEND FFLAGS " -vector0")
+endif()
+set(CXX_LINKER "CXX")
+set(KOKKOS_OPTIONS "--gcc-toolchain=/opt/gcc/9.3.0/snos --with-serial")
+set(CXXFLAGS "-std=c++14")
+if (compile_threaded)
+  string(APPEND CXXFLAGS " -fopenmp")
+endif()
+if (DEBUG)
+  string(APPEND CXXFLAGS " -g -Wall")
+endif()
+if (NOT DEBUG)
+  string(APPEND CXXFLAGS " -O1")
+endif()
diff --git a/cime_config/machines/cmake_macros/gnu.cmake b/cime_config/machines/cmake_macros/gnu.cmake
@@ -0,0 +1,56 @@
+set(CFLAGS "-mcmodel=medium")
+if (compile_threaded)
+  string(APPEND CFLAGS " -fopenmp")
+endif()
+if (DEBUG)
+  string(APPEND CFLAGS " -g -Wall -fbacktrace -fcheck=bounds -ffpe-trap=invalid,zero,overflow")
+endif()
+if (NOT DEBUG)
+  string(APPEND CFLAGS " -O")
+endif()
+if (COMP_NAME STREQUAL csm_share)
+  string(APPEND CFLAGS " -std=c99")
+endif()
+set(CXXFLAGS "-std=c++14")
+if (compile_threaded)
+  string(APPEND CXXFLAGS " -fopenmp")
+endif()
+if (DEBUG)
+  string(APPEND CXXFLAGS " -g -Wall -fbacktrace")
+endif()
+if (NOT DEBUG)
+  string(APPEND CXXFLAGS " -O")
+endif()
+if (COMP_NAME STREQUAL cism)
+  string(APPEND CMAKE_OPTS " -D CISM_GNU=ON")
+endif()
+string(APPEND CPPDEFS " -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU")
+if (DEBUG)
+  string(APPEND CPPDEFS " -DYAKL_DEBUG")
+endif()
+set(CXX_LINKER "FORTRAN")
+set(FC_AUTO_R8 "-fdefault-real-8")
+set(FFLAGS "-mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none")
+if (compile_threaded)
+  string(APPEND FFLAGS " -fopenmp")
+endif()
+if (DEBUG)
+  string(APPEND FFLAGS " -g -Wall -fbacktrace -fcheck=bounds -ffpe-trap=zero,overflow")
+endif()
+if (NOT DEBUG)
+  string(APPEND FFLAGS " -O")
+endif()
+set(FFLAGS_NOOPT "-O0")
+set(FIXEDFLAGS "-ffixed-form")
+set(FREEFLAGS "-ffree-form")
+set(HAS_F2008_CONTIGUOUS "FALSE")
+if (compile_threaded)
+  string(APPEND LDFLAGS " -fopenmp")
+endif()
+set(MPICC "mpicc")
+set(MPICXX "mpicxx")
+set(MPIFC "mpif90")
+set(SCC "gcc")
+set(SCXX "g++")
+set(SFC "gfortran")
+set(SUPPORTS_CXX "TRUE")
diff --git a/cime_config/machines/cmake_macros/gnu_anlworkstation.cmake b/cime_config/machines/cmake_macros/gnu_anlworkstation.cmake
@@ -0,0 +1,15 @@
+set(ALBANY_PATH "/projects/install/rhel6-x86_64/ACME/AlbanyTrilinos/Albany/build/install")
+if (NOT DEBUG)
+  string(APPEND CFLAGS " -O2")
+endif()
+set(CXX_LIBS "-lstdc++")
+if (NOT DEBUG)
+  string(APPEND FFLAGS " -O2")
+endif()
+execute_process(COMMAND $ENV{NETCDF_PATH}/bin/nf-config --flibs OUTPUT_VARIABLE SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0 OUTPUT_STRIP_TRAILING_WHITESPACE)
+string(APPEND SLIBS " ${SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0} -lblas -llapack")
+set(NETCDF_PATH "$ENV{NETCDF_PATH}")
+set(PNETCDF_PATH "$ENV{PNETCDF_PATH}")
+set(HDF5_PATH "$ENV{HDF5_PATH}")
+set(SZIP_PATH "$ENV{SZIP_PATH}")
+set(ZLIB_PATH "$ENV{ZLIB_PATH}")
diff --git a/cime_config/machines/cmake_macros/gnu_anvil.cmake b/cime_config/machines/cmake_macros/gnu_anvil.cmake
@@ -0,0 +1,12 @@
+if (COMP_NAME STREQUAL gptl)
+  string(APPEND CPPDEFS " -DHAVE_NANOTIME -DBIT64 -DHAVE_SLASHPROC -DHAVE_GETTIMEOFDAY")
+endif()
+set(PIO_FILESYSTEM_HINTS "gpfs")
+execute_process(COMMAND $ENV{NETCDF_FORTRAN_PATH}/bin/nf-config --flibs OUTPUT_VARIABLE SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0 OUTPUT_STRIP_TRAILING_WHITESPACE)
+string(APPEND SLIBS " ${SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0}  -L$ENV{MKLROOT}/lib/intel64 -Wl,--no-as-needed -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lm -ldl")
+execute_process(COMMAND $ENV{NETCDF_C_PATH}/bin/nc-config --libs OUTPUT_VARIABLE SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0 OUTPUT_STRIP_TRAILING_WHITESPACE)
+string(APPEND SLIBS " ${SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0}")
+set(CXX_LIBS "-lstdc++")
+set(NETCDF_C_PATH "$ENV{NETCDF_C_PATH}")
+set(NETCDF_FORTRAN_PATH "$ENV{NETCDF_FORTRAN_PATH}")
+set(PNETCDF_PATH "$ENV{PNETCDF_PATH}")
diff --git a/cime_config/machines/cmake_macros/gnu_ascent.cmake b/cime_config/machines/cmake_macros/gnu_ascent.cmake
@@ -0,0 +1,27 @@
+if (NOT DEBUG)
+  string(APPEND CFLAGS " -O2")
+endif()
+if (NOT DEBUG)
+  string(APPEND FFLAGS " -O2")
+endif()
+if (COMP_NAME STREQUAL gptl)
+  string(APPEND CPPDEFS " -DHAVE_SLASHPROC")
+endif()
+if (MPILIB STREQUAL mpi-serial)
+  string(APPEND SLIBS " -L$ENV{NETCDF_C_PATH}/lib -lnetcdf -L$ENV{NETCDF_FORTRAN_PATH}/lib -lnetcdff -L$ENV{ESSL_PATH}/lib64 -lessl -L$ENV{OLCF_NETLIB_LAPACK_ROOT}/lib -llapack")
+endif()
+if (NOT MPILIB STREQUAL mpi-serial)
+  string(APPEND SLIBS " -L$ENV{PNETCDF_PATH}/lib -lpnetcdf -L$ENV{HDF5_PATH}/lib -lhdf5_hl -lhdf5 -L$ENV{NETCDF_C_PATH}/lib -lnetcdf -L$ENV{NETCDF_FORTRAN_PATH}/lib -lnetcdff -L$ENV{ESSL_PATH}/lib64 -lessl -L$ENV{OLCF_NETLIB_LAPACK_ROOT}/lib -llapack")
+endif()
+set(CXX_LIBS "-lstdc++")
+set(MPICC "mpicc")
+set(MPICXX "mpiCC")
+set(MPIFC "mpif90")
+set(SCC "gcc")
+set(SCXX "g++")
+set(SFC "gfortran")
+set(PIO_FILESYSTEM_HINTS "gpfs")
+set(NETCDF_C_PATH "$ENV{NETCDF_C_PATH}")
+set(NETCDF_FORTRAN_PATH "$ENV{NETCDF_FORTRAN_PATH}")
+set(PNETCDF_PATH "$ENV{PNETCDF_PATH}")
+set(SUPPORTS_CXX "TRUE")
diff --git a/cime_config/machines/cmake_macros/gnu_badger.cmake b/cime_config/machines/cmake_macros/gnu_badger.cmake
@@ -0,0 +1,16 @@
+set(PIO_FILESYSTEM_HINTS "lustre")
+set(MPICC "mpicc")
+set(MPIFC "mpif90")
+set(MPICXX "mpic++")
+set(SFC "gfortran")
+set(SCC "gcc")
+set(SCXX "g++")
+execute_process(COMMAND nc-config --libs OUTPUT_VARIABLE SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0 OUTPUT_STRIP_TRAILING_WHITESPACE)
+string(APPEND SLIBS " ${SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0}")
+execute_process(COMMAND nf-config --flibs OUTPUT_VARIABLE SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0 OUTPUT_STRIP_TRAILING_WHITESPACE)
+string(APPEND SLIBS " ${SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0} -lnetcdff -llapack -lblas")
+string(APPEND SLIBS " $ENV{MKLROOT}/lib/intel64/libmkl_scalapack_lp64.a -Wl,--start-group $ENV{MKLROOT}/lib/intel64/libmkl_intel_lp64.a $ENV{MKLROOT}/lib/intel64/libmkl_core.a $ENV{MKLROOT}/lib/intel64/libmkl_sequential.a -Wl,--end-group $ENV{MKLROOT}/lib/intel64/libmkl_blacs_intelmpi_lp64.a -lpthread -lm -lz")
+set(CXX_LIBS "-lstdc++")
+set(NETCDF_C_PATH "$ENV{NETCDF_PATH}")
+set(NETCDF_FORTRAN_PATH "$ENV{NETCDF_PATH}")
+set(PNETCDF_PATH "$ENV{PNETCDF_PATH}")
diff --git a/cime_config/machines/cmake_macros/gnu_bebop.cmake b/cime_config/machines/cmake_macros/gnu_bebop.cmake
@@ -0,0 +1,11 @@
+if (COMP_NAME STREQUAL gptl)
+  string(APPEND CPPDEFS " -DHAVE_SLASHPROC")
+endif()
+set(CXX_LIBS "-lstdc++")
+execute_process(COMMAND $ENV{NETCDF_FORTRAN_PATH}/bin/nf-config --flibs OUTPUT_VARIABLE SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0 OUTPUT_STRIP_TRAILING_WHITESPACE)
+execute_process(COMMAND $ENV{NETCDF_C_PATH}/bin/nc-config --libs OUTPUT_VARIABLE SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE1 OUTPUT_STRIP_TRAILING_WHITESPACE)
+string(APPEND SLIBS " ${SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0} ${SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE1}")
+string(APPEND SLIBS " -L$ENV{MKLROOT}/lib/intel64 -Wl,--no-as-needed -lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -ldl")
+set(NETCDF_C_PATH "$ENV{NETCDF_C_PATH}")
+set(NETCDF_FORTRAN_PATH "$ENV{NETCDF_FORTRAN_PATH}")
+set(PNETCDF_PATH "$ENV{PNETCDF_PATH}")
diff --git a/cime_config/machines/cmake_macros/gnu_cades.cmake b/cime_config/machines/cmake_macros/gnu_cades.cmake
@@ -0,0 +1,33 @@
+if (compile_threaded)
+  string(APPEND CFLAGS " -fopenmp")
+endif()
+if (COMP_NAME STREQUAL cism)
+  string(APPEND CMAKE_OPTS " -D CISM_GNU=ON")
+endif()
+string(APPEND CPPDEFS " -DFORTRANUNDERSCORE -DNO_R16")
+set(CXX_LINKER "FORTRAN")
+set(FC_AUTO_R8 "-fdefault-real-8")
+set(FFLAGS "-O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check")
+if (compile_threaded)
+  string(APPEND FFLAGS " -fopenmp")
+endif()
+if (DEBUG)
+  string(APPEND FFLAGS " -g -Wall")
+endif()
+set(FIXEDFLAGS "-ffixed-form")
+set(FREEFLAGS "-ffree-form")
+set(HDF5_PATH "/software/dev_tools/swtree/cs400_centos7.2_pe2016-08/hdf5-parallel/1.8.17/centos7.2_gnu5.3.0")
+set(NETCDF_PATH "/software/dev_tools/swtree/cs400_centos7.2_pe2016-08/netcdf-hdf5parallel/4.3.3.1/centos7.2_gnu5.3.0")
+set(PNETCDF_PATH "/software/dev_tools/swtree/cs400_centos7.2_pe2016-08/pnetcdf/1.9.0/centos7.2_gnu5.3.0")
+set(LAPACK_LIBDIR "/software/tools/compilers/intel_2017/mkl/lib/intel64")
+if (compile_threaded)
+  string(APPEND LDFLAGS " -fopenmp")
+endif()
+string(APPEND SLIBS " -L${NETCDF_PATH}/lib -Wl,-rpath=${NETCDF_PATH}/lib -lnetcdff -lnetcdf")
+set(MPICC "mpicc")
+set(MPICXX "mpic++")
+set(MPIFC "mpif90")
+set(SCC "gcc")
+set(SCXX "gcpp")
+set(SFC "gfortran")
+set(SUPPORTS_CXX "TRUE")
diff --git a/cime_config/machines/cmake_macros/gnu_chrysalis.cmake b/cime_config/machines/cmake_macros/gnu_chrysalis.cmake
@@ -0,0 +1,12 @@
+if (COMP_NAME STREQUAL gptl)
+  string(APPEND CPPDEFS " -DHAVE_NANOTIME -DBIT64 -DHAVE_SLASHPROC -DHAVE_GETTIMEOFDAY")
+endif()
+set(PIO_FILESYSTEM_HINTS "gpfs")
+execute_process(COMMAND $ENV{NETCDF_FORTRAN_PATH}/bin/nf-config --flibs OUTPUT_VARIABLE SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0 OUTPUT_STRIP_TRAILING_WHITESPACE)
+execute_process(COMMAND $ENV{NETCDF_C_PATH}/bin/nc-config --libs OUTPUT_VARIABLE SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE1 OUTPUT_STRIP_TRAILING_WHITESPACE)
+string(APPEND SLIBS " ${SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0} ${SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE1}")
+string(APPEND SLIBS " -Wl,--start-group $ENV{MKLROOT}/lib/intel64/libmkl_gf_lp64.a $ENV{MKLROOT}/lib/intel64/libmkl_sequential.a $ENV{MKLROOT}/lib/intel64/libmkl_core.a -Wl,--end-group -lpthread -lm -ldl")
+set(CXX_LIBS "-lstdc++")
+set(NETCDF_C_PATH "$ENV{NETCDF_C_PATH}")
+set(NETCDF_FORTRAN_PATH "$ENV{NETCDF_FORTRAN_PATH}")
+set(PNETCDF_PATH "$ENV{PNETCDF_PATH}")
diff --git a/cime_config/machines/cmake_macros/gnu_cori-haswell.cmake b/cime_config/machines/cmake_macros/gnu_cori-haswell.cmake
@@ -0,0 +1,7 @@
+if (NOT DEBUG)
+  string(APPEND CFLAGS " -O2")
+endif()
+if (NOT DEBUG)
+  string(APPEND FFLAGS " -O2")
+endif()
+set(CXX_LIBS "-lstdc++")
diff --git a/cime_config/machines/cmake_macros/gnu_cori-knl.cmake b/cime_config/machines/cmake_macros/gnu_cori-knl.cmake
@@ -0,0 +1,7 @@
+if (NOT DEBUG)
+  string(APPEND CFLAGS " -O2")
+endif()
+if (NOT DEBUG)
+  string(APPEND FFLAGS " -O2")
+endif()
+set(CXX_LIBS "-lstdc++")
diff --git a/cime_config/machines/cmake_macros/gnu_eddi.cmake b/cime_config/machines/cmake_macros/gnu_eddi.cmake
@@ -0,0 +1,18 @@
+set(SUPPORTS_CXX "TRUE")
+if (COMP_NAME STREQUAL gptl)
+  string(APPEND CPPDEFS " -DHAVE_VPRINTF -DHAVE_GETTIMEOFDAY -DHAVE_BACKTRACE")
+endif()
+set(NETCDF_PATH "$ENV{NETCDF_HOME}")
+if (NOT DEBUG)
+  string(APPEND FFLAGS " -fno-unsafe-math-optimizations")
+endif()
+if (DEBUG)
+  string(APPEND FFLAGS " -g -fbacktrace -fbounds-check -ffpe-trap=invalid,zero,overflow")
+endif()
+string(APPEND SLIBS " -L$ENV{NETCDF_HOME}/lib/ -lnetcdff -lnetcdf -lcurl -llapack -lblas")
+if (MPILIB STREQUAL mpi-serial)
+  set(SCC "gcc")
+endif()
+if (MPILIB STREQUAL mpi-serial)
+  set(SFC "gfortran")
+endif()
diff --git a/cime_config/machines/cmake_macros/gnu_gcp.cmake b/cime_config/machines/cmake_macros/gnu_gcp.cmake
@@ -0,0 +1,20 @@
+set(SUPPORTS_CXX "TRUE")
+if (COMP_NAME STREQUAL gptl)
+  string(APPEND CPPDEFS " -DHAVE_VPRINTF -DHAVE_GETTIMEOFDAY -DHAVE_BACKTRACE -DHAVE_SLASHPROC")
+endif()
+set(CXX_LIBS "-lstdc++")
+if (NOT DEBUG)
+  string(APPEND FFLAGS " -fno-unsafe-math-optimizations")
+endif()
+if (DEBUG)
+  string(APPEND FFLAGS " -g -fbacktrace -fbounds-check -ffpe-trap=invalid,zero,overflow")
+endif()
+string(APPEND SLIBS " -L$ENV{HDF5_PATH}/lib -lhdf5_fortran -lhdf5 -lhdf5_hl -lhdf5hl_fortran")
+string(APPEND SLIBS " -L$ENV{NETCDF_C_PATH}/lib -lnetcdf -L$ENV{NETCDF_FORTRAN_PATH}/lib -lnetcdff")
+string(APPEND SLIBS " -L$ENV{CURL_PATH}/lib -lcurl -lblas -llapack")
+string(APPEND SLIBS " -L$ENV{LAPACK_PATH}/lib64 -lblas -llapack")
+string(APPEND SLIBS " -L$ENV{PNETCDF_PATH}/lib -lpnetcdf")
+set(HDF5_PATH "$ENV{HDF5_PATH}")
+set(NETCDF_C_PATH "$ENV{NETCDF_C_PATH}")
+set(NETCDF_FORTRAN_PATH "$ENV{NETCDF_FORTRAN_PATH}")
+set(PNETCDF_PATH "$ENV{PNETCDF_PATH}")
diff --git a/cime_config/machines/cmake_macros/gnu_grizzly.cmake b/cime_config/machines/cmake_macros/gnu_grizzly.cmake
@@ -0,0 +1,16 @@
+set(PIO_FILESYSTEM_HINTS "lustre")
+set(MPICC "mpicc")
+set(MPIFC "mpif90")
+set(MPICXX "mpic++")
+set(SFC "gfortran")
+set(SCC "gcc")
+set(SCXX "g++")
+execute_process(COMMAND nc-config --libs OUTPUT_VARIABLE SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0 OUTPUT_STRIP_TRAILING_WHITESPACE)
+string(APPEND SLIBS " ${SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0}")
+execute_process(COMMAND nf-config --flibs OUTPUT_VARIABLE SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0 OUTPUT_STRIP_TRAILING_WHITESPACE)
+string(APPEND SLIBS " ${SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0} -lnetcdff -llapack -lblas")
+string(APPEND SLIBS " $ENV{MKLROOT}/lib/intel64/libmkl_scalapack_lp64.a -Wl,--start-group $ENV{MKLROOT}/lib/intel64/libmkl_intel_lp64.a $ENV{MKLROOT}/lib/intel64/libmkl_core.a $ENV{MKLROOT}/lib/intel64/libmkl_sequential.a -Wl,--end-group $ENV{MKLROOT}/lib/intel64/libmkl_blacs_intelmpi_lp64.a -lpthread -lm -lz")
+set(CXX_LIBS "-lstdc++")
+set(NETCDF_C_PATH "$ENV{NETCDF_PATH}")
+set(NETCDF_FORTRAN_PATH "$ENV{NETCDF_PATH}")
+set(PNETCDF_PATH "$ENV{PNETCDF_PATH}")
diff --git a/cime_config/machines/cmake_macros/gnu_jlse.cmake b/cime_config/machines/cmake_macros/gnu_jlse.cmake
@@ -0,0 +1,14 @@
+string(APPEND CPPDEFS " -DHAVE_SLASHPROC")
+if (NOT DEBUG)
+  string(APPEND CFLAGS " -O2")
+endif()
+if (NOT DEBUG)
+  string(APPEND FFLAGS " -O2")
+endif()
+execute_process(COMMAND $ENV{NETCDF_PATH}/bin/nf-config --flibs OUTPUT_VARIABLE SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0 OUTPUT_STRIP_TRAILING_WHITESPACE)
+string(APPEND SLIBS " ${SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0} -Wl,-rpath -Wl,$ENV{NETCDF_PATH}/lib")
+execute_process(COMMAND $ENV{NETCDF_PATH}/bin/nc-config --libs OUTPUT_VARIABLE SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0 OUTPUT_STRIP_TRAILING_WHITESPACE)
+string(APPEND SLIBS " ${SHELL_CMD_OUTPUT_BUILD_INTERNAL_IGNORE0}")
+string(APPEND SLIBS " -L/home/azamat/soft/libs -llapack -lblas")
+set(NETCDF_PATH "$ENV{NETCDF_PATH}")
+set(PNETCDF_PATH "$ENV{PNETCDF_PATH}")