Release/devel v7.1.0#348

Merged

dschlaep merged 279 commits intomasterfrom release/devel_v7.1.0

Jun 9, 2023

+10,767-4,027

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Commits on Mar 2, 2022

Updated estimate of theta_min if Campbell1974/Cosby1984
dschlaep
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Commits on Mar 3, 2022

Additional "testing" SWRC parameter file for vanGenuchten1980 values
dschlaep
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New water balance unit tests using vanGenuchten1980 SWRC
dschlaep
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Commits on Mar 9, 2022

Fix SWRC_PDF_swcBulk_minimum() for "Campbell1974" - "NoPDF"
dschlaep
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Commits on May 12, 2022

Merge branch 'master' into feature_swrc
dschlaep
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Commits on Jun 9, 2022

Commits on Jun 10, 2022

Commits on Jun 16, 2022

Merge branch 'master' into feature_swrc
dschlaep
committed

Commits on Jun 27, 2022

Commits on Jun 29, 2022

Merge branch 'master' into feature_swrc
dschlaep
committed
Made allHist a global to hold all weather data
Nicholas Persley
committed
Weather data is now read in all at once
Nicholas Persley
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Added deallocation of allHist
Nicholas Persley
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Moved weth_found to readAllWeather
Nicholas Persley
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Unit tests for new weather related functions
Nicholas Persley
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Commits on Jun 30, 2022

Added chunk of documentation to readAllWeather()
Nicholas Persley
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Fixed syntax mistake and temp_avg calc location in SW_Weather
Nicholas Persley
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Removed unused "prevYearDays" from readAllWeather()
Nicholas Persley
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Commits on Jul 1, 2022

Added new global "n_years" in SW_Weather
Nicholas Persley
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Fixed calculations in readAllWeather
Nicholas Persley
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Removed numYears from dellocateAllHistory
Nicholas Persley
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Commits on Jul 2, 2022

Fixed error causing bug by fixing variable temp_avg
Nicholas Persley
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Added STEPWAT years to SW_Weather.c
Nicholas Persley
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Commits on Jul 5, 2022

Updated what is included when STEPWAT is defined
Nicholas Persley
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Removed global usage of n_years in readAllWeather()
Nicholas Persley
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Commits on Jul 6, 2022

Fixed memory leak originating in test_SW_Weather.cc
Nicholas Persley
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Fixed headers/documentation in SW_Weather.c
Nicholas Persley
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Commits on Jul 7, 2022

Update weather-related "WaterBalance" tests for new readAllWeather()
dschlaep
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Changed name of deallocateAllHistory() to be specific
Nicholas Persley
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deallocateAllWeather() is now called from SW_WTH_read()
Nicholas Persley
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Made error message within readAllWeather()
Nicholas Persley
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Commits on Jul 8, 2022

Created three new unit tests for readAllWeather()
Nicholas Persley
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Commits on Jul 9, 2022

Modified _clear_hist_weather() to fill global allHist
Nicholas Persley
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Set SW_Weather.allHist to NULL in deallocateAllWeather()
Nicholas Persley
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Added comments for existing weather tests
Nicholas Persley
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New unit test in test_SW_Weather.cc and modified existing test
Nicholas Persley
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Moved new generic.c functions
Nicholas Persley
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New vegetation user input flag
Nicholas Persley
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Removed "Yesterday" index from SW_WEATHER_2DAYS
Nicholas Persley
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Moved vegetation estimation wrapper function
Nicholas Persley
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Moved helper functions of estimateVegetationFromClimate()
Nicholas Persley
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Commits on Jul 10, 2022

Added unit tests for climate functions in test_SW_Weather.cc
Nicholas Persley
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Swapped arrays in estimateVegetationFromClimate() for pointers
Nicholas Persley
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Removed vegetation part of estimateVegetationFromClimate()
Nicholas Persley
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Fixed month bug and compiler error
Nicholas Persley
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Commits on Jul 12, 2022

Removed all vegetation traces
Nicholas Persley
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Expanded two unit tests in test_SW_Weather.cc
Nicholas Persley
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Tweaked variables/variable reset in calcSiteClimate() test
Nicholas Persley
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Renamed averageAcrossYears()/modified "MAT_C" calculation
Nicholas Persley
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Modified calcSiteClimate() code and documentation
Nicholas Persley
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Modified findDriestQtr() code and its tests
Nicholas Persley
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Decremented line_help variable to get correct output
Nicholas Persley
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Fixed unexpected test fails in suite CalcSiteClimateTest
Nicholas Persley
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Commits on Jul 14, 2022

Updated variable names of climate-related functions
Nicholas Persley
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Rearranged parameter order and changed variable names
Nicholas Persley
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Moved standard deviation to averageClimateAcrossYears()
Nicholas Persley
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Made days and years better to read in calcSiteClimate()
Nicholas Persley
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Added memset() use/variable changes in calcSiteClimate()
Nicholas Persley
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Added unit tests for standardDeviation() and mean()
Nicholas Persley
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Matched unit test variable names to ones related to climate
Nicholas Persley
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Standard deviation tests moved to averageClimateAcrossYears() tests
Nicholas Persley
committed
Expanded unit tests for calcSiteClimate()
Nicholas Persley
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Expanded unit tests for averageClimateAcrossYears()
Nicholas Persley
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Updated test names to mention purely one input tests
Nicholas Persley
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Deleted zero size arrays to silence test_severe
Nicholas Persley
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Removed useless "TODO" in calcSiteClimate()
Nicholas Persley
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Commits on Jul 15, 2022

Merge branch 'master' into feature_read_weather
Nicholas Persley
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Merge branch 'master' into feature_climate_predictors
Nicholas Persley
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Swapped variable meanMonthlyPPT_cm for monthlyPPT_cm
Nicholas Persley
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New averages in averageClimateAcrossYears()
Nicholas Persley
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New unit tests for averageClimateAcrossYears()
Nicholas Persley
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Fixed bug in number of consecutive frost free days
Nicholas Persley
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Commits on Jul 19, 2022

Merge branch 'master' (v6.5.1) into feature_swrc
dschlaep
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Commits on Jul 20, 2022

Deleted "ifdef" conditional in readAllWeather()
Nicholas Persley
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Cleaned up readAllWeather() ternaries and names
Nicholas Persley
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Commits on Jul 21, 2022

Created two structs to hold climate-related variables
Nicholas Persley
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Modified headers and documentation to use new stucts
Nicholas Persley
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Fix potential for memory leak in SW_WTH_read()
dschlaep
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Renamed type SW_CLIMATE_OUTPUT to SW_CLIMATE_CALC
Nicholas Persley
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Deleted two unused variables in SW_CLIMATE_AVERAGES
Nicholas Persley
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Code properly accesses pointers in climate functions
Nicholas Persley
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Climate tests in test_SW_Weather.cc use new structs
Nicholas Persley
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Commits on Jul 26, 2022

Modified new structs description and names
Nicholas Persley
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Renamed variables in two new climate structs
Nicholas Persley
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Added new function allocDeallocClimateStructs()
Nicholas Persley
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Resolved merge conflicts
Nicholas Persley
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Generalize handling of missing values in forcing (weather) data
dschlaep
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Commits on Jul 27, 2022

Merge branch 'feature_read_weather' into feature_climate_predictors
Nicholas Persley
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Fixed missed 'Today' in SW_WTH_new_day() from commit
Nicholas Persley
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Merge branch 'feature_climate_predictors' into feature_veg_estimation
Nicholas Persley
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Commits on Jul 28, 2022

Created vegetation estimation functions in SW_VegProd.c
Nicholas Persley
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Added call to estimateVegetationFromClimate()
Nicholas Persley
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Commits on Aug 2, 2022

Added to/patched a lot of estimatePotNatVegComposition()
Nicholas Persley
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Rewrote uniqueIndices()
Nicholas Persley
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Added unit tests for estimatePotNatVegComposition()
Nicholas Persley
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Added new user input in file veg.in
Nicholas Persley
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Accommodated to test_severe and set veg values
Nicholas Persley
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Specify type of soil density inputs
dschlaep
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Commits on Aug 3, 2022

Merge pull request #324 from DrylandEcology/feature_soildensity_type
dschlaep
authored

Commits on Aug 4, 2022

Add citations and references to estimatePotNatVegComposition()
dschlaep
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Commits on Aug 7, 2022

New has_swrcp and eliminate "NoPDF"
dschlaep
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Cleaned up new vegetation in SW_VegProd.c
Nicholas Persley
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Made default of veg_method zero/updated description of "1"
Nicholas Persley
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Updated unit tests for estimatePotNatVegComposition()
Nicholas Persley
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Commits on Aug 12, 2022

Fix seeding of markov_rng by SW_MKV_construct()
dschlaep
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Commits on Aug 17, 2022

Modified calcSiteClimate() to adjusted to N/S *
Nicholas Persley
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Merge branch 'feature_climate_predictors' into feature_veg_estimation
Nicholas Persley
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Accommodated vegetation for new "latitude" input
Nicholas Persley
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Commits on Aug 18, 2022

Modified calcSiteClimate() and unit tests
Nicholas Persley
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Renamed and added brief for fillNorthSouthConstants()
Nicholas Persley
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Commits on Aug 19, 2022

Made findDriestQuarter() N/S hemisphere compatible
Nicholas Persley
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Modified description/north south handling of calcSiteClimate()
Nicholas Persley
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Merge branch 'feature_climate_predictors' into feature_veg_estimation
Nicholas Persley
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Commits on Aug 25, 2022

Adjusted how latitude is set in SW_VegProd.c
Nicholas Persley
committed
Fixed possible bugs in vegetation calculation
Nicholas Persley
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Commits on Aug 27, 2022

Fixed bugs in estimatePotNatVegComposition()
Nicholas Persley
committed

Commits on Aug 29, 2022

Adjusted calcSiteClimate() to handle both north/south
Nicholas Persley
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Updated mean() and standardDeviation() to handle SW_MISSING
Nicholas Persley
committed
Merge branch 'feature_climate_predictors' into feature_veg_estimation
Nicholas Persley
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Updated estimatePotNatVegComposition() "inputValues" description
Nicholas Persley
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Updated tests for vegetation
Nicholas Persley
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Commits on Sep 2, 2022

Fixed bug/commented estimatePotNatVegComposition()
Nicholas Persley
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Modified LogError() to use error() and warning()
Nicholas Persley
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Added comments to climate functions and eliminated warning
Nicholas Persley
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Merge branch 'feature_climate_predictors' into feature_veg_estimation
Nicholas Persley
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Commits on Sep 12, 2022

Changed variable names containing months and updated test values
Nicholas Persley
committed
Updated calcSiteClimate() and findDriestQtr() for southern adjustment
Nicholas Persley
committed
Merge branch 'feature_climate_predictors' into feature_veg_estimation
Nicholas Persley
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Fixed error caused by naming and incorrect function input
Nicholas Persley
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Commits on Sep 13, 2022

Finished correctly calculating driest quarter temp
Nicholas Persley
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Merge branch 'feature_climate_predictors' into feature_veg_estimation
Nicholas Persley
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Commits on Sep 22, 2022

Merge v6.6.0 into feature_read_weather
dschlaep
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Commits on Sep 26, 2022

Commits on Sep 27, 2022

Removed "Yesterday" values in SW_WEATHER_2DAYS
Nicholas Persley
committed
Merge branch 'feature_read_weather' into feature_climate_predictors
Nicholas Persley
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Merge branch 'feature_climate_predictors' into feature_veg_estimation
Nicholas Persley
committed

Commits on Oct 3, 2022

Renamed "inNorth" to be more descriptive
Nicholas Persley
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Merge branch 'feature_climate_predictors' into feature_veg_estimation
Nicholas Persley
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Renamed inNorth to be consistent and more descriptive
Nicholas Persley
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Uncommented "inNorthHem = swFALSE" unit test
Nicholas Persley
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Added to NEWS for v7.0.0
Nicholas Persley
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Fixed duplicate "inNorthHem"
Nicholas Persley
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Commits on Oct 5, 2022

Commits on Oct 8, 2022

Merge branch 'feature_read_weather' into feature_climate_predictors
Nicholas Persley
committed
Updated generic and weather function documentation
Nicholas Persley
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Added two tests to generic unit tests
Nicholas Persley
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Updated weather tests/test documentation
Nicholas Persley
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Merge branch 'feature_climate_predictors' into feature_veg_estimation
Nicholas Persley
committed

Commits on Oct 16, 2022

Fixed potential natural vegetation bugs
Nicholas Persley
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Added documentation to vegetation unit tests
Nicholas Persley
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Commits on Oct 17, 2022

Removed "fullVeg" to have ubuntu tests pass
Nicholas Persley
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Commits on Oct 24, 2022

Fixed C4 related estimatePotNatVegComposition() bugs
Nicholas Persley
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Added to vegetation tests and documentation
Nicholas Persley
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Updated values and function calls in tests
Nicholas Persley
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Fixed uninitialization warning
Nicholas Persley
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Commits on Nov 7, 2022

Fixed more bugs in estimatePotNatVegComposition()
Nicholas Persley
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Updated unit tests for new vegetation parameter
Nicholas Persley
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Set input values to 0.0 for incorrectly being SW_MISSING
Nicholas Persley
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Commits on Nov 13, 2022

Undid C4IsList variable in veg estimation
Nicholas Persley
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Fixed more rSOILWAT2-related bugs
Nicholas Persley
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Undid C4-related code in unit tests
Nicholas Persley
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Commits on Nov 14, 2022

Fixed incorrectly set values in veg estimation
Nicholas Persley
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Added/moved to unit tests
Nicholas Persley
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Updated existing unit test R code snippets
Nicholas Persley
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Commits on Nov 15, 2022

Commits on Nov 16, 2022

Merge branch 'feature_read_weather' into feature_climate_predictors
Nicholas Persley
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Fixed "numYears" documentation
Nicholas Persley
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Fixed "climateOutput" documentation
Nicholas Persley
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Merge branch 'feature_climate_predictors' into feature_veg_estimation
Nicholas Persley
committed
Removed "C4IsList" in documentation
Nicholas Persley
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Updated estimateVegetationFromClimate() documentation
Nicholas Persley
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Updated cutZeroInf() code/documentation
Nicholas Persley
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Simplify tests for estimatePotNatVegComposition()
dschlaep
committed

Commits on Nov 18, 2022

Commits on Nov 20, 2022

Modified climate structs' documentation
Nicholas Persley
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R snippets use deprecated function and multi-line comments
Nicholas Persley
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Split allocDeallocClimateStructs() into two functions
Nicholas Persley
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Tests now use split allocDeallocClimateStructs() functions
Nicholas Persley
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Merge branch 'feature_climate_predictors' into feature_veg_estimation
Nicholas Persley
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A fixed mistake within veg.in
Nicholas Persley
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Veg estimation/tests use de/allocateClimateStructs()
Nicholas Persley
committed

Commits on Nov 21, 2022

Backtracked documentation of climate structs
Nicholas Persley
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Commits on Nov 23, 2022

Merge v6.6.0 into feature_swrc
dschlaep
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Merge branch 'feature_climate_predictors' into feature_veg_estimation
Nicholas Persley
committed

Commits on Nov 28, 2022

Commits on Nov 30, 2022

Commits on Dec 1, 2022

GHA: update actions to use node16 replacing deprecated node12
dschlaep
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Commits on Dec 2, 2022

clang-15 warns more strictly for unused-but-set-parameter
dschlaep
committed

Commits on Dec 6, 2022

Commits on Dec 7, 2022

Commits on Dec 8, 2022

Commits on Dec 15, 2022

clang-15 warns more strictly for strict-prototypes
dschlaep
committed

Commits on Dec 16, 2022

Commits on Dec 19, 2022

Commits on Dec 20, 2022

Commits on Dec 21, 2022

Commits on Dec 22, 2022

Commits on Dec 23, 2022

Fix "array-bounds" warning in sw_init_args()
dschlaep
committed

Commits on Dec 29, 2022

Merge pull request #333 from DrylandEcology/feature_restructure
dschlaep
authored

Commits on Jan 13, 2023

Commits on Jan 18, 2023

Commits on Jan 19, 2023

Merge pull request #340 from DrylandEcology/feature_fix_doc_after_restructure
dschlaep
authored

Commits on Feb 3, 2023

Commits on Feb 7, 2023

Commits on Feb 20, 2023

Merge pull request #344 from DrylandEcology/bugfix_too_many_open_files
dschlaep
authored