Setup CLI

[tieneupin]

Adds a command line tool intended to walk non-developers through the process of setting up a configuration file in order to run Murfey properly.

Key Changes:

• The Security class has been renamed to GlobalConfig, and functions referring to it have likewise been renamed.
  • Murfey will likewise now look for the MURFEY_GLOBAL_CONFIGURATION environment variable instead of MURFEY_SECURITY_CONFIGURATION.
• Many MachineConfig keys have been re-typed to take Optional[Path] instead of str as part of making more parts of the Murfey workflow optional for other users. The code parsing logic has been changed to reflect this.

[codecov]

Codecov Report

Attention: Patch coverage is 15.56196% with 586 lines in your changes missing coverage. Please review.

Project coverage is 25.46%. Comparing base (42a774a) to head (9167512).
Report is 3 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #401      +/-   ##
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- Coverage   27.20%   25.46%   -1.75%     
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  Files          75       76       +1     
  Lines       10101    12250    +2149     
  Branches     1337     1797     +460     
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+ Hits         2748     3119     +371     
- Misses       7263     9013    +1750     
- Partials       90      118      +28     

[d-j-hatton]

If nothing is added to something with a default can we give the option to choose to use the default?

[d-j-hatton]

Can we have (y/n) in a different colour to make it clear you should answer with a yes or no?

[d-j-hatton]

The recipe keys can be a literal

[d-j-hatton]

If a section is disabled then the rest of the keys for the section can be skipped

[tieneupin]

As of the time of this writing, the following discussed changes have been implemented:

• If a section is disabled then the rest of the keys for the section can be skipped
• The recipe keys can be a literal
• Can we have (y/n) in a different colour to make it clear you should answer with a yes or no?
• If nothing is added to something with a default can we give the option to choose to use the default?
• Could we leave (press Enter to leave it blank as '') out for non-strings

The following changes are still needed:

• In the tests the environment variables need setting back to MURFEY_SECURITY_CONFIGURATION