update docs

docs/make.jl

@@ -7,19 +7,17 @@ makedocs(;
     modules=[EnzymeFitting],
     authors="Denis Titov [email protected] and contributors",
     sitename="EnzymeFitting.jl",
-    # remotes = Documenter.Remotes.GitHub("DenisTitovLab", "EnzymeFitting.jl"),
-    repo = Documenter.Remotes.GitHub("DenisTitovLab", "EnzymeFitting.jl"),
-    # format=Documenter.HTML(;
-    #     canonical="https://Denis-Titov.github.io/EnzymeFitting.jl",
-    #     edit_link="main",
-    #     assets=String[],
-    # ),
+    format=Documenter.HTML(;
+        canonical="https://Denis-Titov.github.io/EnzymeFitting.jl",
+        edit_link="main",
+        assets=String[],
+    ),
     pages=[
         "Home" => "index.md",
     ],
 )
 
 deploydocs(;
     repo="github.com/DenisTitovLab/EnzymeFitting.jl.git",
-    devbranch="main",
+    # devbranch="main",
 )

docs/src/index.md

@@ -4,7 +4,7 @@ CurrentModule = EnzymeFitting
 
 # EnzymeFitting
 
-Documentation for [EnzymeFitting](https://github.com/Denis-Titov/EnzymeFitting.jl).
+Documentation for [EnzymeFitting](https://github.com/DenisTitovLab/EnzymeFitting.jl).
 
 ```@index
 ```

src/rate_equation_fitting.jl

@@ -4,17 +4,17 @@ CODE FOR RATE EQUATION FITTING
 using CMAEvolutionStrategy, DataFrames, Statistics
 
 #TODO add optimization_kwargs to control the optimization process
-# """
-#     fit_rate_equation(
-#         rate_equation::Function,
-#         data::DataFrame,
-#         metab_names::Tuple,
-#         param_names::Tuple;
-#         n_iter = 20
-# )
+"""
+    fit_rate_equation(
+        rate_equation::Function,
+        data::DataFrame,
+        metab_names::Tuple,
+        param_names::Tuple;
+        n_iter = 20
+)
 
-# Fit `rate_equation` to `data` and report the loss and best fit parameters.
-# """
+Fit `rate_equation` to `data` and report the loss and best fit parameters.
+"""
 function fit_rate_equation(
         rate_equation::Function,
         data::DataFrame,