update links #632
Workflow file for this run
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| # This workflow installs and tests pyDeltaRCM on mulitple python versions and operating systems. | |
| name: build | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: '0 0 1 * *' # run workflow at 12AM on first day of every month | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.9', '3.10', '3.11'] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements-test.txt | |
| pip install -r requirements.txt | |
| - name: Install pyDeltaRCM | |
| run: | | |
| python setup.py install | |
| - name: Test with pytest | |
| run: | | |
| python -m pytest --mpl --mpl-baseline-path=tests/imgs_baseline | |
| coverage: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| env: | |
| OS: ${{ matrix.os }} | |
| PYTHON: '3.10' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ env.PYTHON }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ env.PYTHON }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install pytest pytest-cov pytest-mpl coveralls | |
| pip install -r requirements.txt | |
| - name: Install pyDeltaRCM | |
| run: | | |
| python setup.py install | |
| - name: Disable jitted for coverage | |
| run: | | |
| echo "DISABLE_JIT: 1" > .numba_config.yaml | |
| - name: Test with pytest | |
| run: | | |
| python -m pytest --ignore=tests/integration/ --cov=pyDeltaRCM/ --cov-report=xml --mpl --mpl-baseline-path=tests/imgs_baseline | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: ./coverage.xml | |
| env_vars: OS | |
| name: codecov-umbrella | |
| fail_ci_if_error: true | |
| docs: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| persist-credentials: false | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| pip install -r requirements-docs.txt | |
| sudo apt update -y && sudo apt install -y latexmk texlive-latex-recommended texlive-latex-extra texlive-fonts-recommended dvipng | |
| - name: Install pyDeltaRCM | |
| run: | | |
| python setup.py install | |
| - name: Build and test documentation | |
| run: | | |
| (cd docs && make docs) | |
| - name: Upload log file | |
| uses: actions/upload-artifact@v3 | |
| if: ${{ failure() }} | |
| with: | |
| name: log-file | |
| path: docs/deltaRCM_Output/*.log | |
| - name: Debug | |
| run: | | |
| echo $REF | |
| echo $EVENT_NAME | |
| echo ${{ github.event_name == 'push' }} | |
| echo ${{ github.ref == 'refs/heads/develop' }} | |
| echo ${{ github.event_name == 'push' && github.ref == 'refs/heads/develop' }} | |
| - name: Deploy to GitHub Pages | |
| uses: JamesIves/github-pages-deploy-action@v4 | |
| if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/develop' }} | |
| with: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| EVENT_NAME: ${{ github.event_name }} | |
| REF: ${{ github.ref }} | |
| BRANCH: gh-pages | |
| FOLDER: docs/build/html |