add haplotype suffix to scaffold names

Delphine-L · Sep 12, 2024 · c463e07 · c463e07
1 parent a2c2012
commit c463e07
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diff --git a/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/CHANGELOG.md b/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/CHANGELOG.md
@@ -1,5 +1,10 @@
 # Changelog
 
+
+## [0.2.8] 2024-09-12
+
+- Add suffix to the scaffold names corresponding to the haplotype being assembled
+
 ## [0.2.7] 2024-08-13
 
 - Expose Busco lineage database parameter

diff --git a/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/README.md b/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/README.md
@@ -16,6 +16,7 @@ Example of trajectory :
 5. Concatenated HiC reverse reads [fastq]
 6. Restriction enzyme sequence (recommended for VGP data: Arima Hi-C 2.0)
 7. Estimated genome size [txt]
+8. Haplotype name 
 
 
 ### Outputs

diff --git a/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/Scaffolding-HiC-VGP8-tests.yml b/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/Scaffolding-HiC-VGP8-tests.yml
@@ -19,6 +19,7 @@
     Database for Busco Lineage: v5
     Lineage: vertebrata_odb10
     Restriction enzymes: arima2
+    Haplotype: hap1
   outputs:
     "Reconciliated Scaffolds: gfa":
       asserts:
@@ -28,6 +29,8 @@
       asserts:
         has_n_lines:
           n: 168
+        has_text:
+          text: "scaffold_53.hap1"
     Busco Summary:
       asserts:
         has_text: