add workflow report

Delphine-L · Jul 12, 2024 · 5872e43 · 5872e43
1 parent 7f236ed
commit 5872e43
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diff --git a/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/CHANGELOG.md b/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/CHANGELOG.md
@@ -1,5 +1,9 @@
 # Changelog
 
+## [0.1.6] 2024-07-12
+
+- Add workflow report
+
 ## [0.1.5] 2023-11-20
 
 - Fix author in dockstore

diff --git a/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1.ga b/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1.ga
@@ -1,6 +1,7 @@
 {
     "a_galaxy_workflow": "true",
     "annotation": "",
+    "comments": [],
     "creator": [
         {
             "class": "Organization",
@@ -14,8 +15,11 @@
     ],
     "format-version": "0.1",
     "license": "CC-BY-4.0",
-    "release":"0.1.5",
+	"release":"0.1.6",
     "name": "kmer-profiling-hifi-VGP1",
+    "report": {
+        "markdown": "\n# Workflow Execution Report\n\n\n```galaxy\ninvocation_time()\n```\n\n\n```galaxy\nhistory_dataset_as_image(output=\"GenomeScope linear plot\")\n```\n\n```galaxy\nhistory_dataset_as_image(output=\"GenomeScope log plot\")\n```\n\n```galaxy\nhistory_dataset_as_image(output=\"GenomeScope transformed linear plot\")\n```\n\n```galaxy\nhistory_dataset_as_image(output=\"GenomeScope transformed log plot\")\n```\n\n\n```galaxy\nworkflow_image()\n```\n\n## Workflow\n```galaxy\nworkflow_display()\n```\n"
+    },
     "steps": {
         "0": {
             "annotation": "A simple list collection containing PacBio data in either fastq or fasta format",
@@ -33,7 +37,7 @@
             "name": "Input dataset collection",
             "outputs": [],
             "position": {
-                "left": 0.0,
+                "left": 0,
                 "top": 86.5078125
             },
             "tool_id": null,
@@ -73,7 +77,7 @@
                 {
                     "label": null,
                     "output_name": "output",
-                    "uuid": "18b69ad3-4c09-46f5-9a4c-bf4097b37fef"
+                    "uuid": "a4240190-0161-4966-b3f0-9a19b27e11fe"
                 }
             ]
         },
@@ -106,7 +110,7 @@
                 {
                     "label": null,
                     "output_name": "output",
-                    "uuid": "1fea95fa-67d6-408d-94b6-264107cc19a1"
+                    "uuid": "02e6daaf-94a2-4708-a932-abe0a450c10e"
                 }
             ]
         },
@@ -377,6 +381,16 @@
             "uuid": "955de351-ef19-42dc-89d7-ca213994515a",
             "when": null,
             "workflow_outputs": [
+                {
+                    "label": "GenomeScope Model Parameters",
+                    "output_name": "model_params",
+                    "uuid": "cb88b945-413c-4e2d-81a9-dd838df902ff"
+                },
+                {
+                    "label": "GenomeScope log plot",
+                    "output_name": "log_plot",
+                    "uuid": "988e2189-d5f2-4e9e-8fc2-4434e68e8501"
+                },
                 {
                     "label": "GenomeScope linear plot",
                     "output_name": "linear_plot",
@@ -396,16 +410,6 @@
                     "label": "GenomeScope summary",
                     "output_name": "summary",
                     "uuid": "b74004e1-4f4b-4f43-a9f0-2a7a0a70ca1d"
-                },
-                {
-                    "label": "GenomeScope Model Parameters",
-                    "output_name": "model_params",
-                    "uuid": "cb88b945-413c-4e2d-81a9-dd838df902ff"
-                },
-                {
-                    "label": "GenomeScope log plot",
-                    "output_name": "log_plot",
-                    "uuid": "988e2189-d5f2-4e9e-8fc2-4434e68e8501"
                 }
             ]
         }
@@ -414,6 +418,6 @@
         "Reviewed",
         "VGP"
     ],
-    "uuid": "7542ffba-d083-415e-b745-08d9503debc4",
-    "version": 4
+    "uuid": "253fec6a-351a-40b8-b602-19a305142e85",
+    "version": 1
 }