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@Deep-MI

Deep Medical Imaging Lab (PI Reuter)

Repositories of the Reuter DeepMI Lab

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  1. FastSurfer FastSurfer Public

    PyTorch implementation of FastSurferCNN

    Jupyter Notebook 473 121

  2. FatSegNet FatSegNet Public

    Deep CNN for Abdominal Adipose Tissue Segmentation on Dixon MRI

    Python 22 12

  3. fsqc fsqc Public

    A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data

    Python 60 14

  4. LaPy LaPy Public

    Toolbox for Differential Geometry on Triangle and Tetrahedra Meshes (FEM, Laplace, Poisson, Heat Flow ...)

    Python 69 14

  5. BrainPrint BrainPrint Public

    A python-only derivative of the original BrainPrint scripts

    Python 12 9

  6. olf-bulb-segmentation olf-bulb-segmentation Public

    Automated Olfactory Bulb Segmentation Pipeline for T2-Weighted MRI

    Jupyter Notebook 7 2

Repositories

Showing 10 of 18 repositories
  • FastSurfer Public

    PyTorch implementation of FastSurferCNN

    Deep-MI/FastSurfer’s past year of commit activity
    Jupyter Notebook 473 Apache-2.0 121 11 6 Updated Jan 17, 2025
  • VINNA4neonates Public

    Newborn Whole Brain Segmentation with VINNA

    Deep-MI/VINNA4neonates’s past year of commit activity
    Python 0 Apache-2.0 0 1 0 Updated Jan 9, 2025
  • Deep-MI.github.io Public

    Deep Medical Imaging Lab Webpage

    Deep-MI/Deep-MI.github.io’s past year of commit activity
    TeX 2 MIT 15 0 0 Updated Dec 29, 2024
  • LaPy Public

    Toolbox for Differential Geometry on Triangle and Tetrahedra Meshes (FEM, Laplace, Poisson, Heat Flow ...)

    Deep-MI/LaPy’s past year of commit activity
    Python 69 MIT 14 4 0 Updated Dec 20, 2024
  • LIT Public

    FastSurfer Lesion Inpainting Tool (FastSurfer-LIT) for lesion inpainting e.g. for whole brain segmentation and cortical surface reconstruction in the presence of tumor, surgical cavities or other abnormalities

    Deep-MI/LIT’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Dec 18, 2024
  • WhipperSnapPy Public

    Python OpenGL Tool for Screenshots of Surface Overlays

    Deep-MI/WhipperSnapPy’s past year of commit activity
    Python 0 MIT 7 1 0 Updated Nov 18, 2024
  • BrainPrint Public

    A python-only derivative of the original BrainPrint scripts

    Deep-MI/BrainPrint’s past year of commit activity
    Python 12 MIT 9 0 0 Updated Nov 18, 2024
  • fsqc Public

    A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data

    Deep-MI/fsqc’s past year of commit activity
    Python 60 MIT 14 0 0 Updated Nov 14, 2024
  • head-motion-tools Public
    Deep-MI/head-motion-tools’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Nov 11, 2024
  • hipsta Public

    HIPSTA - a python package for hippocampal shape and thickness analysis

    Deep-MI/hipsta’s past year of commit activity
    Python 5 MIT 0 1 0 Updated Sep 6, 2024
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