Patch Release 8/8 (#127)

* disable cache on ie11, download files, dul link fixes

* added expires header

* configure proxy cache header

* data owner review - dul download

* DUOS public pages and changes on header and footer

* Add validation endpoint

* Fix YAML file (#117)

* Minor fix on default route and warnings removal

* ie tooltip and loop in stateChangeStart fix

* Change yaml files

* Add Dar POst Documentation

* DUOS-132: Update config to use authenticated API

config.json

@@ -1,5 +1,5 @@
 {
-    "apiUrl": "https://consent.dsde-consent-prod.broadinstitute.org/",
+    "apiUrl": "https://consent.dsde-consent-prod.broadinstitute.org/api/",
     "ontologyApiUrl": "https://consent-ontology.dsde-consent-prod.broadinstitute.org/",
     "clientId": "1019469328169-uk6592ph25b0nijc0nm7s2dss4qm2nbu.apps.googleusercontent.com",
     "gwasUrl":"http://epi.grants.cancer.gov/dac/examples.html"

src/app/configuration/config.js

@@ -1,5 +1,5 @@
 angular.module('ConsentConfiguration', [])
-    .constant('apiUrl', "https://consent.dsde-consent-prod.broadinstitute.org/")
+    .constant('apiUrl', "https://consent.dsde-consent-prod.broadinstitute.org/api/")
     .constant('ontologyApiUrl', "https://consent-ontology.dsde-consent-prod.broadinstitute.org/")
     .constant('clientId', "1019469328169-uk6592ph25b0nijc0nm7s2dss4qm2nbu.apps.googleusercontent.com")
     .constant('gwasUrl', "http://epi.grants.cancer.gov/dac/examples.html");

swagger/consents-swagger.yaml

@@ -734,15 +734,14 @@ paths:
         - name: dar
           in: body
           description: The fields that represent a DAR, json format.
+          required: true
           schema:
-            type: string
+            $ref: '#/definitions/DataAccessRequest'
       tags:
         - Data Access Request
       responses:
         '200':
           description: Returns the created Data Access Request, json file.
-          schema:
-            $ref: '#/definitions/DataAccessRequest'
         '500':
           description: Internal Server Error.
     get:
@@ -823,7 +822,7 @@ paths:
             '200':
               description: 'Returns a DARModalDetailsDTO initialized with the DAR associated with the provided Id.'
   '/dar/find/{id}':
-    delete:
+    get:
       summary: describeSpecificFields
       description: Returns the requested fields present in the DAR identified by the ID
       parameters:
@@ -847,7 +846,7 @@ paths:
         '404':
           description: The requested DAR couldn't be found.
   '/dar/find/{id}/consent':
-    delete:
+    get:
       summary: describeConsentForDAR
       description: Returns the consent related to this DAR.
       parameters:
@@ -1923,6 +1922,111 @@ definitions:
         description: The datetime the election was created/updated (the last updated).
   DataAccessRequest:
     type: object
+    properties:
+      investigator:
+        type: string
+        description: 'Describes the name of the Principal Investigator.'
+      institution:
+        type: string
+        description: 'Describes the name of Institution.'
+      department:
+        type: string
+        description: 'Describes the name of the Institution Department.'
+      division:
+        type: string
+        description: 'Describes the name of the Division.'
+      address1:
+        type: string
+        description: 'Describes the principal address.'
+      address2:
+        type: string
+        description: 'Describes the secondary address. Optional.'
+      city:
+        type: string
+        description: 'Describes the name of the City.'
+      state:
+        type: string
+        description: 'Describes the name of the State.'
+      zipcode:
+        type: string
+        description: 'Describes the Zip Code number.'
+      country:
+        type: string
+        description: 'Describes the name of the Country.'
+      projectTitle:
+        type: string
+        description: 'Describes the Project Title.'
+      datasetId:
+        type: array
+        items:
+          type: string
+        description: 'Array of Dataset Ids.'
+      rus:
+        type: string
+        description: 'Describes the Research Use Statement.'
+      non_tech_rus:
+        type: string
+        description: 'Describes the Non Technical Summary.'
+      diseases:
+        type: boolean
+        description: 'Defines if the purpose of the study is disease-related.'
+      methods:
+        type: boolean
+        description: 'Defines if the purpose of the study is for Methods development.'
+      controls:
+        type: boolean
+        description: 'Defines if the purpose of the study is to increase the number of controls available for a comparison group.'
+      population:
+        type: boolean
+        description: 'Defines if the purpose of the study is to understand variation in the general population.'
+      other:
+        type: boolean
+        description: 'Defines if the purpose of the study is other than the above. If TRUE, triggers MANUAL REVIEW.'
+      othertext:
+        type: string
+        description: 'Describes above field.'
+      ontologies:
+        type: array
+        items:
+          type: string
+        description: 'Array of Ontologies.'
+      forProfit:
+        type: boolean
+        description: 'Describes if data will be used for commercial purposes.'
+      oneGender:
+        type: boolean
+        description: 'Describes if study is gender specific.'
+      pediatric:
+        type: boolean
+        description: 'Describes if study is restricted to a pediatric population.'
+      illegalbehave:
+        type: boolean
+        description: 'If TRUE, triggers MANUAL REVIEW.'
+      addiction:
+        type: boolean
+        description: 'If TRUE, triggers MANUAL REVIEW.'
+      sexualdiseases:
+        type: boolean
+        description: 'If TRUE, triggers MANUAL REVIEW.'
+      stigmatizediseases:
+        type: boolean
+        description: 'If TRUE, triggers MANUAL REVIEW.'
+      vulnerablepop:
+        type: boolean
+        description: 'If TRUE, triggers MANUAL REVIEW.'
+      popmigration:
+        type: boolean
+        description: 'If TRUE, triggers MANUAL REVIEW.'
+      psychtraits:
+        type: boolean
+        description: 'If TRUE, triggers MANUAL REVIEW.'
+      nothealth:
+        type: boolean
+        description: 'If TRUE, triggers MANUAL REVIEW.'
+      userId:
+        type: integer
+        format: int32
+        description: 'Describes the id of the User (Researcher).'
   DataAccessRequestManage:
     type: object
     properties:

swagger/ontology-swagger.yaml

@@ -112,10 +112,28 @@ paths:
         - Autocomplete
       responses:
         '200':
-          description: The consent association representation is present in the body of the response.
+          description: Array of results.
         default:
           description: Unexpected error
 
+  '/search':
+
+    get:
+      summary: search
+      description: Find ontologies based on the id.
+      parameters:
+        - name: id
+          in: query
+          description: The ontology id which the service us to find it (e.g. DOID_4).
+          required: true
+          type: string
+      tags:
+        - Search
+      responses:
+        '200':
+          description: The given id was found. Json result with ontology information.
+        default:
+          description: Unexpected error
 
 definitions:
   Restriction:
@@ -153,3 +171,4 @@ definitions:
             items:
               type: string
               description: Array of ontologies.
+