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Update README.md
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DabinJeong authored Mar 14, 2024
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Expand Up @@ -9,7 +9,7 @@ nextflow run TCGA_pipeline.nf -c TCGA_pipeline.config
Modify "cancer_type" field of TCGA_pipeline.config file if you want to get data of other cancer type.
Please refer to TCGA Study abbreviation (https://gdc.cancer.gov/resources-tcga-users/tcga-code-tables/tcga-study-abbreviations) for available cancer types.

Gene length computed with GTF tools (https://www.genemine.org/gtftools.php) with the following code, which computed gene length as a length of merged exons of isoforms (non-overlapping exonic length).
Gene length computed with GTF tools (https://www.genemine.org/gtftools.php) with the following code, which calculated gene length as a length of merged exons of isoforms (non-overlapping exonic length).
~~~
gtftools -l gencode.v36.geneLength.exon_length gencode.v36.annotation.gtf
~~~
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