Skip to content

Commit

Permalink
chore: readme
Browse files Browse the repository at this point in the history
  • Loading branch information
sgalkina committed Feb 3, 2017
1 parent a67ec00 commit ed7adc3
Show file tree
Hide file tree
Showing 2 changed files with 33 additions and 0 deletions.
33 changes: 33 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,33 @@
[![Build Status](https://travis-ci.org/DD-DeCaF/id-mapper.svg?branch=master)]()
[![Codecov](https://codecov.io/gh/DD-DeCaF/id-mapper/branch/master/graph/badge.svg)](https://codecov.io/gh/DD-DeCaF/id-mapper)

# ID Mapper

Powered by [Venom](https://github.com/biosustain/venom)

Based on [MetaNetX](http://www.metanetx.org/). Information about metabolites and reactions is provided by [MNXref namespace](http://www.metanetx.org/mnxdoc/mnxref.html)

Example on how to find a match for the chemical with [BIGG](https://github.com/biosustain/venom) id `nh3` in [BioPath](https://webapps.molecular-networks.com/biopath3/biopath3) database:

```
GET /idmapping/query?id=nh3&db_from=bigg&db_to=biopath HTTP/1.1
Accept: */*
Accept-Encoding: gzip, deflate
Connection: keep-alive
HTTP/1.1 200 OK
Connection: keep-alive
Content-Length: 36
Content-Type: application/json
{
"ids": [
"Ammonia",
"Ammonium-ion"
]
}
```

The graph consists of large amount of connected components. A connected component is considered being one object: a metabolite or a reaction. Search is returning all the elements in the component with `db_to` database name.
![graph](graph.png)
Binary file added graph.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.

0 comments on commit ed7adc3

Please sign in to comment.