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  1. phast phast Public

    PHAST

    C 71 25

  2. LINSIGHT LINSIGHT Public

    C++ 24 9

  3. arg-selection arg-selection Public

    ARG-based inference of selection using deep learning

    Python 17 3

  4. argweaver argweaver Public

    Forked from mjhubisz/argweaver

    Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)

    C++ 13 3

  5. RPHAST RPHAST Public

    RPHAST: Phylogenetic Analysis with Space/Time Models in R

    C 10 3

  6. super-enhancer-code super-enhancer-code Public

    Code for Nature Genetics correspondance, "Is a super-enhancer greater than the sum of its parts?" (2016).

    R 8 2

Repositories

Showing 10 of 19 repositories
  • phast Public

    PHAST

    CshlSiepelLab/phast’s past year of commit activity
    C 71 25 6 1 Updated Dec 16, 2024
  • RPHAST Public

    RPHAST: Phylogenetic Analysis with Space/Time Models in R

    CshlSiepelLab/RPHAST’s past year of commit activity
    C 10 3 0 0 Updated Nov 25, 2024
  • FitCons2 Public
    CshlSiepelLab/FitCons2’s past year of commit activity
    C++ 1 BSD-2-Clause 1 0 0 Updated Jul 10, 2024
  • DENR Public

    Select the most actively transcribed transcript model using PRO-seq

    CshlSiepelLab/DENR’s past year of commit activity
    R 3 MIT 5 0 1 Updated Jun 26, 2024
  • LASSIE Public
    CshlSiepelLab/LASSIE’s past year of commit activity
    Python 2 BSD-2-Clause 1 0 0 Updated May 23, 2024
  • LINSIGHT Public
    CshlSiepelLab/LINSIGHT’s past year of commit activity
    C++ 24 BSD-2-Clause 9 1 0 Updated May 23, 2024
  • bat_genome_analysis Public
    CshlSiepelLab/bat_genome_analysis’s past year of commit activity
    Python 3 0 0 0 Updated Feb 11, 2024
  • arg-selection Public

    ARG-based inference of selection using deep learning

    CshlSiepelLab/arg-selection’s past year of commit activity
    Python 17 3 2 0 Updated Aug 31, 2023
  • argweaver Public Forked from mjhubisz/argweaver

    Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)

    CshlSiepelLab/argweaver’s past year of commit activity
    C++ 13 MIT 19 7 0 Updated May 1, 2023
  • SimPol Public
    CshlSiepelLab/SimPol’s past year of commit activity
    HTML 1 MIT 1 0 0 Updated Apr 18, 2023
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