feat: add ecdysis to Conduit CLI (#1983)

* structure pkg

* refactor to reutilize global flags

* update root with global flags

* update new init

* finish migrating commands

* update which ones are general flags

* fix lint

* remove TODO

* hide completion for now

* feature complete

* fix CI

* fix conduit init

* fix flags on pipelines init

* fix pipelines init

* uses simplified version of generator and file

* fix init

* fix removed config

* test root flags

* simpler version

* use config on init

* test in progress

* fixes

* parsing config wip

* update root using decorator

* fix conduit init

* simplifies

* remove unnecessary check

* defaultSource or defaultDestination only if empty

* uses latest changes on ecdysis

* fetch latest ecdysis

* update latest ecdysis and root test

* chore: use ecdysis 0.0.1