Code

fix: create tnscope mnvs#1524

Code

Merged

mathiasbio merged 124 commits intodevelopClinical-Genomics/BALSAMIC:developfrom create_tnscope_mnvsClinical-Genomics/BALSAMIC:create_tnscope_mnvsCopy head branch name to clipboardFeb 7, 2025

+629-41

Commits

Commits on Nov 29, 2024

• Merge branch 'develop' of github.com:Clinical-Genomics/BALSAMIC into develop

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  0862377

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• rework bcftools filter

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Commits on Dec 10, 2024

• new filter

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• convert to list

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Commits on Dec 16, 2024

• major refactor of filter logic

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• fix

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• fix clinical and research filters

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Commits on Dec 18, 2024

• fix vardict tn hardfilters

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• update vardict hardfilters

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• update

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• change script

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• change raw delivery vcf file for UMI and standard tga

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Commits on Jan 23, 2025

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• refactor constant

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• add BioinfoTools constant to balsamic smk

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• remove umi param from general tga

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• removing unussed analysis workflow param

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• refactor

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• Merge branch 'develop' of github.com:Clinical-Genomics/BALSAMIC into develop

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Commits on Jan 27, 2025

• fix clinical hard filters

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Commits on Jan 28, 2025

• add new vardict filter

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• corrected vardict strandbias to be general

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Commits on Jan 29, 2025

• change logic of mnv filters

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• Merge branch 'disable_normal_hardfilter' of github.com:Clinical-Genomics/BALSAMIC into disable_normal_hardfilter

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• change order of mnv processing

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Commits on Jan 30, 2025

• add hard filter of MERGED variants

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• fix filter

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• convert filter to infofield

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• change filter

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• Merge branch 'develop' of github.com:Clinical-Genomics/BALSAMIC into develop

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