Merge #927

927: Up deps, bump version r=charleskawczynski a=charleskawczynski Update deps and bump version. Co-authored-by: Charles Kawczynski <[email protected]>
CliMA · Apr 18, 2022 · 1af5252 · 1af5252 · charleskawczynski · Apr 18, 2022
2 parents 59419dd + fb176e4
commit 1af5252
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diff --git a/Project.toml b/Project.toml
@@ -1,7 +1,7 @@
 name = "TurbulenceConvection"
 uuid = "8e072fc4-01f8-44fb-b9dc-f9336c367e6b"
 authors = ["Climate Modeling Alliance"]
-version = "0.18.0"
+version = "0.19.0"
 
 [deps]
 CLIMAParameters = "6eacf6c3-8458-43b9-ae03-caf5306d3d53"

diff --git a/docs/Manifest.toml b/docs/Manifest.toml
@@ -129,16 +129,16 @@ uuid = "6eacf6c3-8458-43b9-ae03-caf5306d3d53"
 version = "0.4.3"
 
 [[deps.CPUSummary]]
-deps = ["IfElse", "Static"]
-git-tree-sha1 = "48e01b22ef077b07541309652f697595f8decf25"
+deps = ["CpuId", "IfElse", "Static"]
+git-tree-sha1 = "80f3d536df634cabed8b98ad3f0cea3a715fd254"
 uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9"
-version = "0.1.18"
+version = "0.1.20"
 
 [[deps.CUDA]]
 deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CompilerSupportLibraries_jll", "ExprTools", "GPUArrays", "GPUCompiler", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "TimerOutputs"]
-git-tree-sha1 = "a28686d7c83026069cc2505016269cca77506ed3"
+git-tree-sha1 = "ba75320aaa092b3e17c020a2d8b9e0a572dbfa6a"
 uuid = "052768ef-5323-5732-b1bb-66c8b64840ba"
-version = "3.8.5"
+version = "3.9.0"
 
 [[deps.Cairo_jll]]
 deps = ["Artifacts", "Bzip2_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"]
@@ -183,15 +183,15 @@ version = "0.1.2"
 
 [[deps.ClimaComms]]
 deps = ["CUDA", "KernelAbstractions", "StaticArrays"]
-git-tree-sha1 = "b144631d46a36eb36add96cb5cd32693ea53ef11"
+git-tree-sha1 = "50fbb76557f11e28ec21ad2fbe5e7547f1b1f432"
 uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d"
-version = "0.1.1"
+version = "0.3.0"
 
 [[deps.ClimaCore]]
-deps = ["Adapt", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DiffEqBase", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "IntervalSets", "LinearAlgebra", "RecursiveArrayTools", "RootSolvers", "Rotations", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
-git-tree-sha1 = "7caf4f9d92ba3038c3ec9886920844e4efa7a1de"
+deps = ["Adapt", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DiffEqBase", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "IntervalSets", "LinearAlgebra", "RecursiveArrayTools", "RootSolvers", "Rotations", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
+git-tree-sha1 = "5dbe75f49ca1d240530863a26e9ce790d3c39e57"
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
-version = "0.9.0"
+version = "0.10.0"
 
 [[deps.CloseOpenIntervals]]
 deps = ["ArrayInterface", "Static"]
@@ -242,9 +242,9 @@ version = "0.3.0"
 
 [[deps.Compat]]
 deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
-git-tree-sha1 = "96b0bc6c52df76506efc8a441c6cf1adcb1babc4"
+git-tree-sha1 = "b153278a25dd42c65abbf4e62344f9d22e59191b"
 uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "3.42.0"
+version = "3.43.0"
 
 [[deps.CompilerSupportLibraries_jll]]
 deps = ["Artifacts", "Libdl"]
@@ -262,6 +262,12 @@ git-tree-sha1 = "9f02045d934dc030edad45944ea80dbd1f0ebea7"
 uuid = "d38c429a-6771-53c6-b99e-75d170b6e991"
 version = "0.5.7"
 
+[[deps.CpuId]]
+deps = ["Markdown"]
+git-tree-sha1 = "32d125af0fb8ec3f8935896122c5e345709909e5"
+uuid = "adafc99b-e345-5852-983c-f28acb93d879"
+version = "0.3.0"
+
 [[deps.CubedSphere]]
 deps = ["Elliptic", "Printf", "Rotations", "TaylorSeries", "Test"]
 git-tree-sha1 = "f66fabd1ee5df59a7ba47c7873a6332c19e0c03f"
@@ -318,9 +324,9 @@ version = "0.1.0+0"
 
 [[deps.DiffEqBase]]
 deps = ["ArrayInterface", "ChainRulesCore", "DEDataArrays", "DataStructures", "Distributions", "DocStringExtensions", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "IterativeSolvers", "LabelledArrays", "LinearAlgebra", "Logging", "MuladdMacro", "NonlinearSolve", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "Setfield", "SparseArrays", "StaticArrays", "Statistics", "SuiteSparse", "ZygoteRules"]
-git-tree-sha1 = "d1c8d8b645500d7dffec3355d29af6c4f8bfa6df"
+git-tree-sha1 = "cde20558d9a50ebef5f173aaa0e6ece8ca563c93"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.82.3"
+version = "6.83.1"
 
 [[deps.DiffEqJump]]
 deps = ["ArrayInterface", "Compat", "DataStructures", "DiffEqBase", "FunctionWrappers", "Graphs", "LinearAlgebra", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "StaticArrays", "TreeViews", "UnPack"]
@@ -408,10 +414,10 @@ uuid = "2e619515-83b5-522b-bb60-26c02a35a201"
 version = "2.4.8+0"
 
 [[deps.ExponentialUtilities]]
-deps = ["ArrayInterface", "LinearAlgebra", "Printf", "Requires", "SparseArrays", "libblastrampoline_jll"]
-git-tree-sha1 = "b026981973ccbe38682fbb4ccb0732fd6b1e1207"
+deps = ["ArrayInterface", "GenericSchur", "LinearAlgebra", "Printf", "Requires", "SparseArrays", "libblastrampoline_jll"]
+git-tree-sha1 = "951c44b4af9d1e061d5cf789a30881471604c14c"
 uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18"
-version = "1.13.0"
+version = "1.14.0"
 
 [[deps.ExprTools]]
 git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d"
@@ -547,9 +553,9 @@ version = "8.3.2"
 
 [[deps.GPUCompiler]]
 deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"]
-git-tree-sha1 = "647a54f196b5ffb7c3bc2fec5c9a57fa273354cc"
+git-tree-sha1 = "556190e1e0ea3e37d83059fc9aa576f1e2104375"
 uuid = "61eb1bfa-7361-4325-ad38-22787b887f55"
-version = "0.13.14"
+version = "0.14.1"
 
 [[deps.GR]]
 deps = ["Base64", "DelimitedFiles", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Printf", "Random", "RelocatableFolders", "Serialization", "Sockets", "Test", "UUIDs"]
@@ -569,6 +575,12 @@ git-tree-sha1 = "45bf52a9fb04350d8771ad694772c18c878683b6"
 uuid = "d54b0c1a-921d-58e0-8e36-89d8069c0969"
 version = "0.5.7"
 
+[[deps.GenericSchur]]
+deps = ["LinearAlgebra", "Printf"]
+git-tree-sha1 = "fb69b2a645fa69ba5f474af09221b9308b160ce6"
+uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e"
+version = "0.5.3"
+
 [[deps.GeometryBasics]]
 deps = ["EarCut_jll", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"]
 git-tree-sha1 = "83ea630384a13fc4f002b77690bc0afeb4255ac9"
@@ -645,12 +657,6 @@ git-tree-sha1 = "303d70c961317c4c20fafaf5dbe0e6d610c38542"
 uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8"
 version = "2.7.1+0"
 
-[[deps.HypergeometricFunctions]]
-deps = ["DualNumbers", "LinearAlgebra", "SpecialFunctions", "Test"]
-git-tree-sha1 = "65e4589030ef3c44d3b90bdc5aac462b4bb05567"
-uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a"
-version = "0.3.8"
-
 [[deps.IOCapture]]
 deps = ["Logging", "Random"]
 git-tree-sha1 = "f7be53659ab06ddc986428d3a9dcc95f6fa6705a"
@@ -690,9 +696,9 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
 
 [[deps.IntervalSets]]
 deps = ["Dates", "Statistics"]
-git-tree-sha1 = "be25da7314bea50ad8303325ba08d9257bf19f9c"
+git-tree-sha1 = "eb381d885e30ef859068fce929371a8a5d06a914"
 uuid = "8197267c-284f-5f27-9208-e0e47529a953"
-version = "0.6.0"
+version = "0.6.1"
 
 [[deps.InverseFunctions]]
 deps = ["Test"]
@@ -771,9 +777,9 @@ version = "0.8.0"
 
 [[deps.KrylovKit]]
 deps = ["LinearAlgebra", "Printf"]
-git-tree-sha1 = "0328ad9966ae29ccefb4e1b9bfd8c8867e4360df"
+git-tree-sha1 = "49b0c1dd5c292870577b8f58c51072bd558febb9"
 uuid = "0b1a1467-8014-51b9-945f-bf0ae24f4b77"
-version = "0.5.3"
+version = "0.5.4"
 
 [[deps.LAME_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -928,18 +934,18 @@ version = "1.15.0"
 
 [[deps.LogExpFunctions]]
 deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"]
-git-tree-sha1 = "58f25e56b706f95125dcb796f39e1fb01d913a71"
+git-tree-sha1 = "a970d55c2ad8084ca317a4658ba6ce99b7523571"
 uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
-version = "0.3.10"
+version = "0.3.12"
 
 [[deps.Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
 [[deps.LoopVectorization]]
 deps = ["ArrayInterface", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "SIMDDualNumbers", "SLEEFPirates", "SpecialFunctions", "Static", "ThreadingUtilities", "UnPack", "VectorizationBase"]
-git-tree-sha1 = "aa73a4f9379db5b4d573bce890289fb34239403d"
+git-tree-sha1 = "4acc35e95bf18de5e9562d27735bef0950f2ed74"
 uuid = "bdcacae8-1622-11e9-2a5c-532679323890"
-version = "0.12.105"
+version = "0.12.108"
 
 [[deps.MKL_jll]]
 deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
@@ -1107,9 +1113,9 @@ version = "1.4.1"
 
 [[deps.OrdinaryDiffEq]]
 deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"]
-git-tree-sha1 = "adb3b4eec5bd0234dc55b7459d61276a870436c2"
+git-tree-sha1 = "8031a288c9b418664a3dfbac36e464a3f61ace73"
 uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
-version = "6.8.0"
+version = "6.10.0"
 
 [[deps.PCRE_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -1171,9 +1177,9 @@ version = "0.4.0"
 
 [[deps.Polyester]]
 deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StrideArraysCore", "ThreadingUtilities"]
-git-tree-sha1 = "ad769d3f29cffb33380ab28318a10c1ccb19c827"
+git-tree-sha1 = "8d95a735921204f5d551ac300b20d802a150433a"
 uuid = "f517fe37-dbe3-4b94-8317-1923a5111588"
-version = "0.6.7"
+version = "0.6.8"
 
 [[deps.PolyesterWeave]]
 deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"]
@@ -1221,9 +1227,9 @@ version = "2.4.2"
 
 [[deps.Quaternions]]
 deps = ["DualNumbers", "LinearAlgebra", "Random"]
-git-tree-sha1 = "3754f35199da1bb4a55211ddbfd64cb1efee2272"
+git-tree-sha1 = "b327e4db3f2202a4efafe7569fcbe409106a1f75"
 uuid = "94ee1d12-ae83-5a48-8b1c-48b8ff168ae0"
-version = "0.5.4"
+version = "0.5.6"
 
 [[deps.REPL]]
 deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
@@ -1264,15 +1270,15 @@ version = "0.5.2"
 
 [[deps.RecursiveArrayTools]]
 deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "DocStringExtensions", "FillArrays", "LinearAlgebra", "RecipesBase", "Requires", "StaticArrays", "Statistics", "ZygoteRules"]
-git-tree-sha1 = "f5dd036acee4462949cc10c55544cc2bee2545d6"
+git-tree-sha1 = "bfe14f127f3e7def02a6c2b1940b39d0dabaa3ef"
 uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
-version = "2.25.1"
+version = "2.26.3"
 
 [[deps.RecursiveFactorization]]
 deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "StrideArraysCore", "TriangularSolve"]
-git-tree-sha1 = "7ad4c2ef15b7aecd767b3921c0d255d39b3603ea"
+git-tree-sha1 = "a9a852c7ebb08e2a40e8c0ab9830a744fa283690"
 uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4"
-version = "0.2.9"
+version = "0.2.10"
 
 [[deps.Reexport]]
 git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b"
@@ -1343,9 +1349,9 @@ version = "0.1.0"
 
 [[deps.SLEEFPirates]]
 deps = ["IfElse", "Static", "VectorizationBase"]
-git-tree-sha1 = "d4c366b135fc2e1af7a000473e08edc5afd94819"
+git-tree-sha1 = "ac399b5b163b9140f9c310dfe9e9aaa225617ff6"
 uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa"
-version = "0.6.31"
+version = "0.6.32"
 
 [[deps.SciMLBase]]
 deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "RecipesBase", "RecursiveArrayTools", "StaticArrays", "Statistics", "Tables", "TreeViews"]
@@ -1427,9 +1433,9 @@ uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 
 [[deps.StatsAPI]]
 deps = ["LinearAlgebra"]
-git-tree-sha1 = "c3d8ba7f3fa0625b062b82853a7d5229cb728b6b"
+git-tree-sha1 = "8d7530a38dbd2c397be7ddd01a424e4f411dcc41"
 uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0"
-version = "1.2.1"
+version = "1.2.2"
 
 [[deps.StatsBase]]
 deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
@@ -1438,10 +1444,10 @@ uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 version = "0.33.16"
 
 [[deps.StatsFuns]]
-deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
-git-tree-sha1 = "72e6abd6fc9ef0fa62a159713c83b7637a14b2b8"
+deps = ["ChainRulesCore", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
+git-tree-sha1 = "5950925ff997ed6fb3e985dcce8eb1ba42a0bbe7"
 uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
-version = "0.9.17"
+version = "0.9.18"
 
 [[deps.StochasticDiffEq]]
 deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqJump", "DiffEqNoiseProcess", "DocStringExtensions", "FillArrays", "FiniteDiff", "ForwardDiff", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"]
@@ -1451,9 +1457,9 @@ version = "6.46.0"
 
 [[deps.StrideArraysCore]]
 deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "Requires", "SIMDTypes", "Static", "ThreadingUtilities"]
-git-tree-sha1 = "c7e0392560f15771003cce388fe8471d17941374"
+git-tree-sha1 = "df8fc9d0407a77241c529cc2ef97ba2e3436ff51"
 uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da"
-version = "0.2.19"
+version = "0.3.2"
 
 [[deps.StringEncodings]]
 deps = ["Libiconv_jll"]
@@ -1548,15 +1554,15 @@ version = "0.1.11"
 
 [[deps.Tullio]]
 deps = ["ChainRulesCore", "DiffRules", "LinearAlgebra", "Requires"]
-git-tree-sha1 = "7830c974acc69437a3fee35dd7b510a74cbc862d"
+git-tree-sha1 = "859e2e9a7222553a0c052e423557cedb49376da9"
 uuid = "bc48ee85-29a4-5162-ae0b-a64e1601d4bc"
-version = "0.3.3"
+version = "0.3.4"
 
 [[deps.TurbulenceConvection]]
 deps = ["CLIMAParameters", "ClimaCore", "CloudMicrophysics", "Dierckx", "Distributions", "DocStringExtensions", "FastGaussQuadrature", "Flux", "LambertW", "LinearAlgebra", "OperatorFlux", "StaticArrays", "StatsBase", "StochasticDiffEq", "Thermodynamics", "UnPack"]
 path = ".."
 uuid = "8e072fc4-01f8-44fb-b9dc-f9336c367e6b"
-version = "0.17.4"
+version = "0.18.0"
 
 [[deps.URIs]]
 git-tree-sha1 = "97bbe755a53fe859669cd907f2d96aee8d2c1355"
@@ -1588,9 +1594,9 @@ version = "0.1.2"
 
 [[deps.VectorizationBase]]
 deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "Hwloc", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static"]
-git-tree-sha1 = "460aacceb20a12ec187eb8ca183c5944dc6c99c4"
+git-tree-sha1 = "9d1b533f597d87ce9b4abd36a2ce4664f08e08ed"
 uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f"
-version = "0.21.28"
+version = "0.21.29"
 
 [[deps.VertexSafeGraphs]]
 deps = ["Graphs"]
@@ -1772,9 +1778,9 @@ version = "1.5.2+0"
 
 [[deps.Zygote]]
 deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "IRTools", "InteractiveUtils", "LinearAlgebra", "MacroTools", "NaNMath", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"]
-git-tree-sha1 = "52adc0a505b6421a8668f13dcdb0c4cb498bd72c"
+git-tree-sha1 = "8c3e9ae8c2b520200df59d4f683a0dab65685ade"
 uuid = "e88e6eb3-aa80-5325-afca-941959d7151f"
-version = "0.6.37"
+version = "0.6.38"
 
 [[deps.ZygoteRules]]
 deps = ["MacroTools"]