Merge branch 'main' into asc_model_example

.github/workflows/DocPreviewCleanup.yml

@@ -0,0 +1,29 @@
+name: Doc Preview Cleanup
+
+on:
+  pull_request:
+    types: [closed]
+
+jobs:
+  doc-preview-cleanup:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout gh-pages branch
+        uses: actions/checkout@v3
+        with:
+          repository: CliMA/ClimaOceanDocumentation
+          ref: gh-pages
+      - name: Delete preview and history + push changes
+        run: |
+            if [ -d "previews/PR$PRNUM" ]; then
+              git config user.name "Documenter.jl"
+              git config user.email "[email protected]"
+              git rm -rf "previews/PR$PRNUM"
+              git commit -m "delete preview"
+              git branch gh-pages-new $(echo "delete history" | git commit-tree HEAD^{tree})
+              git push --force origin gh-pages-new:gh-pages
+            fi
+        env:
+            PRNUM: ${{ github.event.number }}
+            GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # For authentication with GitHub Actions token
+            SSH_DEPLOY_KEY: ${{ secrets.SSH_DEPLOY_KEY }} # For authentication with SSH deploy key

.github/workflows/Documenter.yml

@@ -0,0 +1,33 @@
+name: Documentation
+
+on:
+  push:
+    branches:
+      - main
+    tags: '*'
+  pull_request:
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Cancel Previous Runs
+        uses: styfle/[email protected]
+        with:
+          access_token: ${{ github.token }}
+      - uses: actions/checkout@v3
+      - uses: julia-actions/setup-julia@latest
+        with:
+          version: 1.9
+          show-versioninfo: true
+      - name: Install dependencies
+        run: |
+          julia --color=yes --project -e 'using Pkg; Pkg.instantiate()'
+          julia --color=yes --project=docs/ -e 'using Pkg; Pkg.instantiate()'
+          julia --color=yes --project=docs/ -e 'using Pkg; Pkg.precompile()'
+      - name: Build and deploy
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # For authentication with GitHub Actions token
+          DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }} # For authentication with SSH deploy key
+          JULIA_DEBUG: Documenter
+        run: julia --color=yes --project=docs/ docs/make.jl

.github/workflows/TagBot.yml

@@ -0,0 +1,15 @@
+name: TagBot
+on:
+  issue_comment:
+    types:
+      - created
+  workflow_dispatch:
+jobs:
+  TagBot:
+    if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'
+    runs-on: ubuntu-latest
+    steps:
+      - uses: JuliaRegistries/TagBot@v1
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          lookback: 3

.github/workflows/ci.yml

@@ -0,0 +1,54 @@
+name: CI
+on:
+  push:
+    branches: [main]
+    tags: ["*"]
+  pull_request:
+jobs:
+  test:
+    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+          - '1.9'
+          # - nightly
+        os:
+          - ubuntu-latest
+        arch:
+          - x64
+          - x86
+        include:
+          # test macOS and Windows with latest Julia only
+          - os: macOS-latest
+            arch: x64
+            version: 1.9
+          - os: windows-latest
+            arch: x64
+            version: 1.9
+          - os: windows-latest
+            arch: x86
+            version: 1.9
+    steps:
+      - uses: actions/checkout@v3
+      - uses: julia-actions/setup-julia@latest
+        with:
+          version: ${{ matrix.version }}
+          arch: ${{ matrix.arch }}
+      - uses: actions/cache@v3
+        env:
+          cache-name: cache-artifacts
+        with:
+          path: ~/.julia/artifacts
+          key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
+          restore-keys: |
+            ${{ runner.os }}-test-${{ env.cache-name }}-
+            ${{ runner.os }}-test-
+            ${{ runner.os }}-
+      - uses: julia-actions/julia-buildpkg@v1
+      - uses: julia-actions/julia-runtest@v1
+      - uses: julia-actions/julia-processcoverage@v1
+      - uses: codecov/codecov-action@v2
+        with:
+          file: lcov.info

.gitignore

@@ -21,5 +21,12 @@ docs/site/
 # It records a fixed state of all packages used by the project. As such, it should not be
 # committed for packages, but should be committed for applications that require a static
 # environment.
-Manifest.toml
+# Manifest.toml
 *.swp
+*.jld2
+*.mp4
+*.DS_Store
+*.nc
+*.json
+*.sha512
+data