Merge remote-tracking branch 'origin/main' into sb/mutable-grid

CliMA · Oct 24, 2023 · f020e73 · f020e73
2 parents dce8683 + f31a62a
commit f020e73
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Showing 7 changed files with 167 additions and 128 deletions.
diff --git a/Project.toml b/Project.toml
@@ -1,7 +1,7 @@
 name = "ClimaCore"
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
 authors = ["CliMA Contributors <[email protected]>"]
-version = "0.10.54"
+version = "0.10.55"
 
 [deps]
 Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"

diff --git a/benchmarks/bickleyjet/Manifest.toml b/benchmarks/bickleyjet/Manifest.toml
@@ -20,9 +20,9 @@ version = "1.5.0"
 
 [[deps.Adapt]]
 deps = ["LinearAlgebra", "Requires"]
-git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24"
+git-tree-sha1 = "68c4c187a232e7abe00ac29e3b03e09af9d77317"
 uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
-version = "3.6.2"
+version = "3.7.0"
 weakdeps = ["StaticArrays"]
 
     [deps.Adapt.extensions]
@@ -160,13 +160,13 @@ version = "0.5.5"
 deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
 path = "../.."
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
-version = "0.10.53"
+version = "0.10.55"
 
 [[deps.CodecZlib]]
 deps = ["TranscodingStreams", "Zlib_jll"]
-git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092"
+git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8"
 uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
-version = "0.7.2"
+version = "0.7.3"
 
 [[deps.ColorSchemes]]
 deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
@@ -230,9 +230,9 @@ version = "0.6.2"
 
 [[deps.CubedSphere]]
 deps = ["Elliptic", "FFTW", "Printf", "ProgressBars", "SpecialFunctions", "TaylorSeries", "Test"]
-git-tree-sha1 = "131498c78453d02b4821d8b93f6e44595399f19f"
+git-tree-sha1 = "253193dfb0384646936c5ff3230b27a20d91261e"
 uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb"
-version = "0.2.3"
+version = "0.2.4"
 
 [[deps.DataAPI]]
 git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c"
@@ -344,9 +344,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
 
 [[deps.FillArrays]]
 deps = ["LinearAlgebra", "Random"]
-git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434"
+git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef"
 uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
-version = "1.6.1"
+version = "1.7.0"
 weakdeps = ["SparseArrays", "Statistics"]
 
     [deps.FillArrays.extensions]
@@ -508,9 +508,9 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
 
 [[deps.IntervalSets]]
 deps = ["Dates", "Random"]
-git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6"
+git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47"
 uuid = "8197267c-284f-5f27-9208-e0e47529a953"
-version = "0.7.7"
+version = "0.7.8"
 weakdeps = ["Statistics"]
 
     [deps.IntervalSets.extensions]
@@ -528,9 +528,9 @@ version = "1.0.0"
 
 [[deps.JLFzf]]
 deps = ["Pipe", "REPL", "Random", "fzf_jll"]
-git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185"
+git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d"
 uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c"
-version = "0.1.5"
+version = "0.1.6"
 
 [[deps.JLLWrappers]]
 deps = ["Artifacts", "Preferences"]
@@ -552,9 +552,9 @@ version = "2.1.91+0"
 
 [[deps.KernelAbstractions]]
 deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"]
-git-tree-sha1 = "4c5875e4c228247e1c2b087669846941fb6e0118"
+git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27"
 uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
-version = "0.9.8"
+version = "0.9.10"
 
     [deps.KernelAbstractions.extensions]
     EnzymeExt = "EnzymeCore"
@@ -995,9 +995,9 @@ version = "0.6.12"
 
 [[deps.RecursiveArrayTools]]
 deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
-git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7"
+git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8"
 uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
-version = "2.39.0"
+version = "2.38.10"
 
     [deps.RecursiveArrayTools.extensions]
     RecursiveArrayToolsMeasurementsExt = "Measurements"
@@ -1063,9 +1063,9 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
 
 [[deps.SortingAlgorithms]]
 deps = ["DataStructures"]
-git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee"
+git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63"
 uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
-version = "1.1.1"
+version = "1.2.0"
 
 [[deps.SparseArrays]]
 deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"]
@@ -1149,9 +1149,9 @@ version = "1.0.1"
 
 [[deps.Tables]]
 deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"]
-git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead"
+git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d"
 uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
-version = "1.11.0"
+version = "1.11.1"
 
 [[deps.Tar]]
 deps = ["ArgTools", "SHA"]
@@ -1187,15 +1187,18 @@ uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
 version = "0.5.23"
 
 [[deps.TranscodingStreams]]
-deps = ["Random", "Test"]
-git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769"
+git-tree-sha1 = "49cbf7c74fafaed4c529d47d48c8f7da6a19eb75"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.9.13"
+version = "0.10.1"
+weakdeps = ["Random", "Test"]
+
+    [deps.TranscodingStreams.extensions]
+    TestExt = ["Test", "Random"]
 
 [[deps.URIs]]
-git-tree-sha1 = "b7a5e99f24892b6824a954199a45e9ffcc1c70f0"
+git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b"
 uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
-version = "1.5.0"
+version = "1.5.1"
 
 [[deps.UUIDs]]
 deps = ["Random", "SHA"]
@@ -1450,9 +1453,9 @@ version = "3.2.9+0"
 
 [[deps.fzf_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56"
+git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e"
 uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09"
-version = "0.29.0+0"
+version = "0.35.1+0"
 
 [[deps.gperf_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]

diff --git a/docs/Manifest.toml b/docs/Manifest.toml
@@ -274,10 +274,10 @@ uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d"
 version = "0.5.5"
 
 [[deps.ClimaCore]]
-deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "Memoize", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack", "WeakValueDicts"]
+deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
 path = ".."
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
-version = "0.10.54"
+version = "0.10.55"
 
 [[deps.ClimaCoreMakie]]
 deps = ["ClimaCore", "Makie"]
@@ -1477,12 +1477,6 @@ git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102"
 uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e"
 version = "0.3.2"
 
-[[deps.Memoize]]
-deps = ["MacroTools"]
-git-tree-sha1 = "2b1dfcba103de714d31c033b5dacc2e4a12c7caa"
-uuid = "c03570c3-d221-55d1-a50c-7939bbd78826"
-version = "0.4.4"
-
 [[deps.MicrosoftMPI_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "a7023883872e52bc29bcaac74f19adf39347d2d5"
@@ -2549,11 +2543,6 @@ git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da"
 uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91"
 version = "1.25.0+0"
 
-[[deps.WeakValueDicts]]
-git-tree-sha1 = "98528c2610a5479f091d470967a25becfd83edd0"
-uuid = "897b6980-f191-5a31-bcb0-bf3c4585e0c1"
-version = "0.1.0"
-
 [[deps.WoodburyMatrices]]
 deps = ["LinearAlgebra", "SparseArrays"]
 git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3"

diff --git a/examples/Manifest.toml b/examples/Manifest.toml
@@ -238,10 +238,10 @@ uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d"
 version = "0.5.5"
 
 [[deps.ClimaCore]]
-deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "Memoize", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack", "WeakValueDicts"]
+deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
 path = ".."
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
-version = "0.10.54"
+version = "0.10.55"
 
 [[deps.ClimaCorePlots]]
 deps = ["ClimaCore", "RecipesBase", "StaticArrays", "TriplotBase"]
@@ -1226,12 +1226,6 @@ git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102"
 uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e"
 version = "0.3.2"
 
-[[deps.Memoize]]
-deps = ["MacroTools"]
-git-tree-sha1 = "2b1dfcba103de714d31c033b5dacc2e4a12c7caa"
-uuid = "c03570c3-d221-55d1-a50c-7939bbd78826"
-version = "0.4.4"
-
 [[deps.MicroCollections]]
 deps = ["BangBang", "InitialValues", "Setfield"]
 git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e"
@@ -2088,11 +2082,6 @@ git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da"
 uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91"
 version = "1.25.0+0"
 
-[[deps.WeakValueDicts]]
-git-tree-sha1 = "98528c2610a5479f091d470967a25becfd83edd0"
-uuid = "897b6980-f191-5a31-bcb0-bf3c4585e0c1"
-version = "0.1.0"
-
 [[deps.WriteVTK]]
 deps = ["Base64", "CodecZlib", "FillArrays", "LightXML", "TranscodingStreams", "VTKBase"]
 git-tree-sha1 = "41f0dc2a8f6fd860c266b91fd5cdf4fead65ae69"