Add Grids, make them mutable objects (#1487)

Add Grids layer, makes Grid and Topology objects mutable.

Gives significant improvement in compilation time.

Co-authored-by: Charles Kawczynski <[email protected]>

.dev/Manifest.toml

@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.9.3"
+julia_version = "1.9.4"
 manifest_format = "2.0"
 project_hash = "30b405be1c677184b7703a9bfb3d2100029ccad0"
 
@@ -86,12 +86,12 @@ version = "1.0.42"
 [[deps.LibCURL]]
 deps = ["LibCURL_jll", "MozillaCACerts_jll"]
 uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
-version = "0.6.3"
+version = "0.6.4"
 
 [[deps.LibCURL_jll]]
 deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
 uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
-version = "7.84.0+0"
+version = "8.4.0+0"
 
 [[deps.LibGit2]]
 deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
@@ -100,7 +100,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
 [[deps.LibSSH2_jll]]
 deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
 uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
-version = "1.10.2+0"
+version = "1.11.0+1"
 
 [[deps.Libdl]]
 uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
@@ -213,7 +213,7 @@ version = "1.2.13+0"
 [[deps.nghttp2_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
-version = "1.48.0+0"
+version = "1.52.0+1"
 
 [[deps.p7zip_jll]]
 deps = ["Artifacts", "Libdl"]

.dev/up_deps.jl

@@ -12,6 +12,7 @@ dirs = (
     joinpath(root, "perf"),
     joinpath(root, "docs"),
     joinpath(root, "test"),
+    joinpath(root, "benchmarks", "bickleyjet"),
     joinpath(root, "lib", "ClimaCoreMakie"),
     joinpath(root, "lib", "ClimaCorePlots"),
     joinpath(root, "lib", "ClimaCoreTempestRemap"),

.github/workflows/ClimaCoreMakie.yml

@@ -5,7 +5,7 @@ on:
 jobs:
   lib-climacore-makie:
     runs-on: ubuntu-20.04
-    timeout-minutes: 30
+    timeout-minutes: 45
     steps:
       - name: Checkout
         uses: actions/checkout@v2

Project.toml

@@ -19,6 +19,7 @@ HDF5 = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f"
 InteractiveUtils = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
 IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
+Memoize = "c03570c3-d221-55d1-a50c-7939bbd78826"
 PkgVersion = "eebad327-c553-4316-9ea0-9fa01ccd7688"
 RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd"
 Requires = "ae029012-a4dd-5104-9daa-d747884805df"
@@ -28,6 +29,7 @@ Static = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
 StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
 Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 UnPack = "3a884ed6-31ef-47d7-9d2a-63182c4928ed"
+WeakValueDicts = "897b6980-f191-5a31-bcb0-bf3c4585e0c1"
 
 [compat]
 Adapt = "3"
@@ -44,6 +46,7 @@ GilbertCurves = "0.1"
 HDF5 = "0.16, 0.17"
 InteractiveUtils = "1"
 IntervalSets = "0.5, 0.6, 0.7"
+Memoize = "0.4"
 LinearAlgebra = "1"
 PkgVersion = "0.1, 0.2, 0.3"
 RecursiveArrayTools = "2"
@@ -54,4 +57,5 @@ Static = "0.4, 0.5, 0.6, 0.7, 0.8"
 StaticArrays = "1"
 Statistics = "1"
 UnPack = "1"
+WeakValueDicts = "0.1"
 julia = "1.8"