Update manifest files

docs/Manifest.toml

@@ -205,16 +205,20 @@ uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9"
 version = "0.2.4"
 
 [[deps.CUDA]]
-deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Preferences", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "UnsafeAtomicsLLVM"]
-git-tree-sha1 = "968c1365e2992824c3e7a794e30907483f8469a9"
+deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "Statistics", "UnsafeAtomicsLLVM"]
+git-tree-sha1 = "f062a48c26ae027f70c44f48f244862aec47bf99"
 uuid = "052768ef-5323-5732-b1bb-66c8b64840ba"
-version = "4.4.1"
+version = "5.0.0"
+weakdeps = ["SpecialFunctions"]
+
+    [deps.CUDA.extensions]
+    SpecialFunctionsExt = "SpecialFunctions"
 
 [[deps.CUDA_Driver_jll]]
 deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
-git-tree-sha1 = "498f45593f6ddc0adff64a9310bb6710e851781b"
+git-tree-sha1 = "35a37bb72b35964f2895c12c687ae263b4ac170c"
 uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc"
-version = "0.5.0+1"
+version = "0.6.0+3"
 
 [[deps.CUDA_Runtime_Discovery]]
 deps = ["Libdl"]
@@ -224,9 +228,9 @@ version = "0.2.2"
 
 [[deps.CUDA_Runtime_jll]]
 deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
-git-tree-sha1 = "5248d9c45712e51e27ba9b30eebec65658c6ce29"
+git-tree-sha1 = "178a606891f82b6d734f0eadd5336b7aad44d5df"
 uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2"
-version = "0.6.0+0"
+version = "0.9.2+1"
 
 [[deps.Calculus]]
 deps = ["LinearAlgebra"]
@@ -384,6 +388,12 @@ git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c"
 uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
 version = "1.15.0"
 
+[[deps.DataFrames]]
+deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
+git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8"
+uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
+version = "1.6.1"
+
 [[deps.DataStructures]]
 deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
 git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d"
@@ -419,9 +429,9 @@ version = "0.1.0+0"
 
 [[deps.DiffEqBase]]
 deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"]
-git-tree-sha1 = "766ab4574433d22ff75ab28e9081114e73cef5d5"
+git-tree-sha1 = "d5a64797f46c37ea59da9e4dcc86b208cb150182"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.132.0"
+version = "6.133.0"
 
     [deps.DiffEqBase.extensions]
     DiffEqBaseDistributionsExt = "Distributions"
@@ -670,9 +680,9 @@ uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
 
 [[deps.GPUArrays]]
 deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"]
-git-tree-sha1 = "2e57b4a4f9cc15e85a24d603256fe08e527f48d1"
+git-tree-sha1 = "8ad8f375ae365aa1eb2f42e2565a40b55a4b69a8"
 uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7"
-version = "8.8.1"
+version = "9.0.0"
 
 [[deps.GPUArraysCore]]
 deps = ["Adapt"]
@@ -682,9 +692,9 @@ version = "0.1.5"
 
 [[deps.GPUCompiler]]
 deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"]
-git-tree-sha1 = "72b2e3c2ba583d1a7aa35129e56cf92e07c083e3"
+git-tree-sha1 = "5e4487558477f191c043166f8301dd0b4be4e2b2"
 uuid = "61eb1bfa-7361-4325-ad38-22787b887f55"
-version = "0.21.4"
+version = "0.24.5"
 
 [[deps.GaussQuadrature]]
 deps = ["SpecialFunctions"]
@@ -767,9 +777,15 @@ uuid = "6a3955dd-da59-5b1f-98d4-e7296123deb5"
 version = "0.7.8"
 
 [[deps.Inflate]]
-git-tree-sha1 = "5cd07aab533df5170988219191dfad0519391428"
+git-tree-sha1 = "ea8031dea4aff6bd41f1df8f2fdfb25b33626381"
 uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9"
-version = "0.1.3"
+version = "0.1.4"
+
+[[deps.InlineStrings]]
+deps = ["Parsers"]
+git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461"
+uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48"
+version = "1.4.0"
 
 [[deps.Insolation]]
 deps = ["Artifacts", "Dates", "DelimitedFiles", "Interpolations"]
@@ -803,6 +819,11 @@ weakdeps = ["Statistics"]
     [deps.IntervalSets.extensions]
     IntervalSetsStatisticsExt = "Statistics"
 
+[[deps.InvertedIndices]]
+git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038"
+uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f"
+version = "1.3.0"
+
 [[deps.IrrationalConstants]]
 git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2"
 uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
@@ -1094,9 +1115,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
 
 [[deps.MarkdownAST]]
 deps = ["AbstractTrees", "Markdown"]
-git-tree-sha1 = "e8513266815200c0c8f522d6d44ffb5e9b366ae4"
+git-tree-sha1 = "465a70f0fc7d443a00dcdc3267a497397b8a3899"
 uuid = "d0879d2d-cac2-40c8-9cee-1863dc0c7391"
-version = "0.1.1"
+version = "0.1.2"
 
 [[deps.MbedTLS_jll]]
 deps = ["Artifacts", "Libdl"]
@@ -1283,6 +1304,12 @@ git-tree-sha1 = "240d7170f5ffdb285f9427b92333c3463bf65bf6"
 uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad"
 version = "0.2.1"
 
+[[deps.PooledArrays]]
+deps = ["DataAPI", "Future"]
+git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3"
+uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720"
+version = "1.4.3"
+
 [[deps.PreallocationTools]]
 deps = ["Adapt", "ArrayInterface", "ForwardDiff", "Requires"]
 git-tree-sha1 = "f739b1b3cc7b9949af3b35089931f2b58c289163"
@@ -1459,16 +1486,20 @@ version = "0.6.39"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"]
-git-tree-sha1 = "cc82f4c0ee2493cb2c1b3df66a2ef7fc45b6eacb"
+git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.2.0"
+version = "2.4.0"
 
     [deps.SciMLBase.extensions]
-    PyCallExt = "PyCall"
-    ZygoteExt = "Zygote"
+    SciMLBasePyCallExt = "PyCall"
+    SciMLBasePythonCallExt = "PythonCall"
+    SciMLBaseRCallExt = "RCall"
+    SciMLBaseZygoteExt = "Zygote"
 
     [deps.SciMLBase.weakdeps]
     PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
+    PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d"
+    RCall = "6f49c342-dc21-5d91-9882-a32aef131414"
     Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
 
 [[deps.SciMLNLSolve]]
@@ -1489,6 +1520,12 @@ git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a"
 uuid = "6c6a2e73-6563-6170-7368-637461726353"
 version = "1.2.0"
 
+[[deps.SentinelArrays]]
+deps = ["Dates", "Random"]
+git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39"
+uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c"
+version = "1.4.0"
+
 [[deps.Serialization]]
 uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
 
@@ -1546,9 +1583,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 
 [[deps.SparseDiffTools]]
 deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"]
-git-tree-sha1 = "0a4538040f6eeae9016043104056dc6c13e1d8c1"
+git-tree-sha1 = "336fd944a1bbb8873bfa8171387608ca93317d68"
 uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804"
-version = "2.7.0"
+version = "2.8.0"
 
     [deps.SparseDiffTools.extensions]
     SparseDiffToolsEnzymeExt = "Enzyme"