Merge #2161

2161: Update manifest files, overload ClimaTimeSteppers r=charleskawczynski a=charleskawczynski This PR upgrades to the latest dependencies and overloads ClimaTimeSteppers methods so that we can more easily iterate on fixing #2015. Co-authored-by: Charles Kawczynski <[email protected]>
CliMA · Sep 27, 2023 · 49e681c · 49e681c
2 parents bac0b76 + abbc8c1
commit 49e681c
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diff --git a/docs/Manifest.toml b/docs/Manifest.toml
@@ -250,7 +250,7 @@ version = "1.16.0"
 deps = ["ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "CLIMAParameters", "CUDA", "ClimaComms", "ClimaCore", "ClimaTimeSteppers", "CloudMicrophysics", "Colors", "Dates", "Dierckx", "DiffEqCallbacks", "Distributions", "DocStringExtensions", "FastGaussQuadrature", "ImageFiltering", "Insolation", "Interpolations", "IntervalSets", "JLD2", "LambertW", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "OrdinaryDiffEq", "Pkg", "Printf", "RRTMGP", "Random", "RootSolvers", "SciMLBase", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "TerminalLoggers", "Test", "Thermodynamics", "YAML"]
 path = ".."
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
-version = "0.16.0"
+version = "0.16.1"
 
 [[deps.ClimaComms]]
 deps = ["CUDA", "MPI"]
@@ -266,9 +266,9 @@ version = "0.10.51"
 
 [[deps.ClimaTimeSteppers]]
 deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
-git-tree-sha1 = "70b0118d12a137550f1626bf4c20ebb66a45f2e0"
+git-tree-sha1 = "203e4f8208bcd1584dcdd9e2210dd1a33b8f96ab"
 uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79"
-version = "0.7.8"
+version = "0.7.9"
 
 [[deps.CloseOpenIntervals]]
 deps = ["Static", "StaticArrayInterface"]
@@ -323,9 +323,9 @@ version = "0.3.0"
 
 [[deps.Compat]]
 deps = ["UUIDs"]
-git-tree-sha1 = "e460f044ca8b99be31d35fe54fc33a5c33dd8ed7"
+git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c"
 uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "4.9.0"
+version = "4.10.0"
 weakdeps = ["Dates", "LinearAlgebra"]
 
     [deps.Compat.extensions]
@@ -447,9 +447,9 @@ version = "6.130.0"
 
 [[deps.DiffEqCallbacks]]
 deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"]
-git-tree-sha1 = "42424e81924d4f463c6f8db8ce2978d51ba0aeaf"
+git-tree-sha1 = "acc53f895588767cbb296d3d8581ebd203524a2e"
 uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def"
-version = "2.30.0"
+version = "2.33.0"
 
     [deps.DiffEqCallbacks.weakdeps]
     OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
@@ -483,9 +483,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
 [[deps.Distributions]]
 deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"]
-git-tree-sha1 = "938fe2981db009f531b6332e31c58e9584a2f9bd"
+git-tree-sha1 = "9e11104e7b41a8a5f04e8694467fc1f94a135bd7"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.25.100"
+version = "0.25.101"
 
     [deps.Distributions.extensions]
     DistributionsChainRulesCoreExt = "ChainRulesCore"
@@ -534,6 +534,12 @@ git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237"
 uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56"
 version = "1.0.4"
 
+[[deps.EnzymeCore]]
+deps = ["Adapt"]
+git-tree-sha1 = "3250001c57b9a3e18e1e5a257fb9ec2c012286c6"
+uuid = "f151be2c-9106-41f4-ab19-57ee4f262869"
+version = "0.5.3"
+
 [[deps.ExponentialUtilities]]
 deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"]
 git-tree-sha1 = "602e4585bcbd5a25bc06f514724593d13ff9e862"
@@ -806,9 +812,9 @@ version = "1.0.0"
 
 [[deps.JLD2]]
 deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"]
-git-tree-sha1 = "773125c999b4ebfe31e679593c8af7f43f401f1c"
+git-tree-sha1 = "c11d691a0dc8e90acfa4740d293ade57f68bfdbb"
 uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
-version = "0.4.34"
+version = "0.4.35"
 
 [[deps.JLLWrappers]]
 deps = ["Artifacts", "Preferences"]
@@ -851,13 +857,11 @@ deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "P
 git-tree-sha1 = "4c5875e4c228247e1c2b087669846941fb6e0118"
 uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
 version = "0.9.8"
+weakdeps = ["EnzymeCore"]
 
     [deps.KernelAbstractions.extensions]
     EnzymeExt = "EnzymeCore"
 
-    [deps.KernelAbstractions.weakdeps]
-    EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869"
-
 [[deps.Krylov]]
 deps = ["LinearAlgebra", "Printf", "SparseArrays"]
 git-tree-sha1 = "17e462054b42dcdda73e9a9ba0c67754170c88ae"
@@ -965,14 +969,15 @@ uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125"
 version = "2.5.2"
 
 [[deps.LinearSolve]]
-deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
-git-tree-sha1 = "dd70543d3c4fc712c14d67e2d35b90817e8bc37d"
+deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
+git-tree-sha1 = "ba01f7a97d3d8bd711b2c00a8a68c887d8a85c9d"
 uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
-version = "2.6.0"
+version = "2.8.1"
 
     [deps.LinearSolve.extensions]
     LinearSolveBlockDiagonalsExt = "BlockDiagonals"
     LinearSolveCUDAExt = "CUDA"
+    LinearSolveEnzymeExt = "Enzyme"
     LinearSolveHYPREExt = "HYPRE"
     LinearSolveIterativeSolversExt = "IterativeSolvers"
     LinearSolveKernelAbstractionsExt = "KernelAbstractions"
@@ -984,6 +989,7 @@ version = "2.6.0"
     [deps.LinearSolve.weakdeps]
     BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0"
     CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
+    Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9"
     HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771"
     IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153"
     KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
@@ -1163,9 +1169,9 @@ version = "1.2.0"
 
 [[deps.NonlinearSolve]]
 deps = ["ArrayInterface", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"]
-git-tree-sha1 = "ee53089df81a6bdf3c06c17cf674e90931b10a73"
+git-tree-sha1 = "e10debcea868cd6e51249e8eeaf191c25f68a640"
 uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec"
-version = "1.10.0"
+version = "1.10.1"
 
 [[deps.OffsetArrays]]
 deps = ["Adapt"]
@@ -1208,20 +1214,20 @@ version = "1.6.2"
 
 [[deps.OrdinaryDiffEq]]
 deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"]
-git-tree-sha1 = "ba3ed480f991b846cf9a8118d3370d9752e7166d"
+git-tree-sha1 = "ede6c2334cb30bc83a450b282c10d0ae82fc122e"
 uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
-version = "6.55.0"
+version = "6.56.0"
 
 [[deps.PDMats]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "3129380a93388e5062e946974246fe3f2e7c73e2"
+git-tree-sha1 = "bf6085e8bd7735e68c210c6e5d81f9a6fe192060"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.18"
+version = "0.11.19"
 
 [[deps.PackageExtensionCompat]]
-git-tree-sha1 = "f9b1e033c2b1205cf30fd119f4e50881316c1923"
+git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518"
 uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930"
-version = "1.0.1"
+version = "1.0.2"
 weakdeps = ["Requires", "TOML"]
 
 [[deps.PaddedViews]]
@@ -1313,9 +1319,9 @@ version = "0.1.4"
 
 [[deps.QuadGK]]
 deps = ["DataStructures", "LinearAlgebra"]
-git-tree-sha1 = "eeab25344bf9901146c0200a7ca64ea479f8bf5c"
+git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1"
 uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
-version = "2.9.0"
+version = "2.9.1"
 
 [[deps.REPL]]
 deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
@@ -1447,9 +1453,9 @@ version = "1.98.1"
 
 [[deps.SciMLNLSolve]]
 deps = ["DiffEqBase", "LineSearches", "NLsolve", "Reexport", "SciMLBase"]
-git-tree-sha1 = "9dfc8e9e3d58c0c74f1a821c762b5349da13eccf"
+git-tree-sha1 = "765b788339abd7d983618c09cfc0192e2b6b15fd"
 uuid = "e9a6253c-8580-4d32-9898-8661bb511710"
-version = "0.1.8"
+version = "0.1.9"
 
 [[deps.SciMLOperators]]
 deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"]
@@ -1478,9 +1484,9 @@ uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383"
 
 [[deps.SimpleNonlinearSolve]]
 deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PackageExtensionCompat", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"]
-git-tree-sha1 = "20aa9831d654bab67ed561e78917047143ecb9bf"
+git-tree-sha1 = "4d53b83af904049c493daaf2a225bcae994a3c59"
 uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7"
-version = "0.1.19"
+version = "0.1.20"
 
     [deps.SimpleNonlinearSolve.extensions]
     SimpleNonlinearSolveNNlibExt = "NNlib"
@@ -1575,9 +1581,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"]
 
 [[deps.StaticArrays]]
 deps = ["LinearAlgebra", "Random", "StaticArraysCore"]
-git-tree-sha1 = "51621cca8651d9e334a659443a74ce50a3b6dfab"
+git-tree-sha1 = "d5fb407ec3179063214bc6277712928ba78459e2"
 uuid = "90137ffa-7385-5640-81b9-e52037218182"
-version = "1.6.3"
+version = "1.6.4"
 weakdeps = ["Statistics"]
 
     [deps.StaticArrays.extensions]