GitHub - Clarkvale/SimplePrograms: Simple scripts including sorting of vcf files, creating strain-specific reference sequences, extracting sequence from reference fasta using genomic coordinates etc.

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Simple scripts including sorting of vcf files, creating strain-specific reference sequences, extracting sequence from reference fasta using genomic coordinates etc.

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Name		Name	Last commit message	Last commit date
Latest commit History 7 Commits
.gitattributes		.gitattributes
.gitignore		.gitignore
Extract_private.py		Extract_private.py
bwa_alignment_batch.py		bwa_alignment_batch.py
bwa_pairing_matepairs_batch.py		bwa_pairing_matepairs_batch.py
psuedogenome_SNPs.py		psuedogenome_SNPs.py
sequence_extractor.py		sequence_extractor.py
sort_vcf.py		sort_vcf.py

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Simple scripts including sorting of vcf files, creating strain-specific reference sequences, extracting sequence from reference fasta using genomic coordinates etc.

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