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Title (and font properties) + frame removal #13

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Title (and font properties) + frame removal #13

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9ab086d
Title
fbrundu Jul 10, 2018
1c81848
Font for title
fbrundu Jul 10, 2018
108e98a
Fix font props
fbrundu Jul 10, 2018
8f4da4d
Merge pull request #3 from fbrundu/fbrundu-patch-2
fbrundu Jul 10, 2018
fa35f6f
Remove frame
fbrundu Jul 10, 2018
bfd53ac
Merge pull request #4 from fbrundu/fbrundu-patch-2
fbrundu Jul 10, 2018
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13 changes: 12 additions & 1 deletion scTDA/main.py
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Original file line number Diff line number Diff line change
Expand Up @@ -13,6 +13,7 @@

import json
import matplotlib_venn
import matplotlib.pyplot as plt
import networkx
import numexpr
import numpy
Expand Down Expand Up @@ -42,6 +43,11 @@
GLOBAL METHODS
"""

def _remove_frame(ax):
plt.setp(ax.spines.values(), linewidth=0)
ax.set_xticks([])
ax.set_yticks([])


def ParseAyasdiGraph(name, source, lab, user, password):
"""
Expand Down Expand Up @@ -1190,7 +1196,8 @@ def adjacency_matrix(self, lista, ind=1, verbose=False):
return numpy.array(mat)

def draw(self, color, connected=True, labels=False, ccmap='jet', weight=8.0, save='', ignore_log=False,
table=False, axis=[], a=0.4, dpi=None, figsize=None, lw=1.0):
table=False, axis=[], a=0.4, dpi=None, figsize=None, lw=1.0, title=None,
font_props={'fontname': 'Arial'}, remove_frame=False):
"""
Displays topological representation of the data colored according to the expression of a gene, genes or
list of genes, specified by argument 'color'. This can be a gene or a list of one, two or three genes or lists
Expand Down Expand Up @@ -1336,6 +1343,10 @@ def draw(self, color, connected=True, labels=False, ccmap='jet', weight=8.0, sav
rowColours=['r', 'g', 'b'], colWidths=[0.08] * 7)
the_table.scale(1.787, 1)
pylab.subplots_adjust(bottom=0.2)
if title is not None:
plt.title(title, **font_props)
if remove_frame:
_remove_frame(plt.gca())
if len(axis) == 4:
pylab.axis(axis)
if save == '':
Expand Down