fix bugs; add rereco submission script

bugfix: prevent dat2root from filling an extra event at the end
bugfix: do not append local path to beginning of condor job input

dat2root.cc

@@ -218,9 +218,6 @@ int main(int argc, char **argv) {
   int nGoodEvents = 0;
   for( int iEvent = 0; iEvent < nEvents; iEvent++){ 
 
-    // check for end of file
-    if (feof(fpin)) break;
-
     if ( iEvent % 100 == 0 ) std::cout << "Event " << iEvent << " of " << nEvents << std::endl;
     event = nGoodEvents; // for output tree
 
@@ -232,6 +229,9 @@ int main(int argc, char **argv) {
     // third and fourth header words
     dummy = fread( &event_header, sizeof(uint), 1, fpin);  
     dummy = fread( &event_header, sizeof(uint), 1, fpin);  
+
+    // check for end of file
+    if (feof(fpin)) break;
 
     //*************************
     // Parse group mask into channels

rereco_submit.py

@@ -0,0 +1,23 @@
+### Job submission script for all .dat files on EOS
+
+import glob
+from subprocess import call
+
+if __name__ == '__main__':
+    dirs = [
+            "/eos/uscms/store/user/cmstestbeam/BTL/",
+            "/eos/uscms/store/user/cmstestbeam/ETL/05042017/",
+            "/eos/uscms/store/user/cmstestbeam/ETL/05052017/",
+            ]
+    for d in dirs:
+        files = glob.glob(d+"/*.dat")
+        for f in files:
+            print "File: ",f
+            cmd = ['python', 'submit_condor.py', f,
+                    #'--no-sub',
+                    '--proxy', '/tmp/x509up_u48463',
+                    '--out-dir', '/uscms_data/d1/djanders/05May2017',
+                    '--config', '15may2017.config',
+                    ]
+            print ' '.join(cmd)
+            call(cmd)

submit_condor.py

@@ -51,7 +51,7 @@ def submitCondorJob(executable, options, infile, outfile,
     executable = local_dir+'/runDat2Root'
 
     infiles = [
-           local_dir+args.infile,
+           args.infile,
            local_dir+"config/"+args.config,
            local_dir+"v1740_bd1_group_0_dV.txt",
            local_dir+"v1740_bd1_group_0_offset.txt",