Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

euler user guide update #880

Merged
merged 1 commit into from
May 13, 2024
Merged

euler user guide update #880

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
17 changes: 12 additions & 5 deletions doc/guide/Guide_Euler.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -60,7 +60,7 @@
"Use the new software stack. Unless you have already done so, run `set_software_stack.sh new`.\n",
"\n",
"```bash\n",
"module load gcc/8.2.0 python/3.10.4 hdf5/1.10.1 gdal/3.4.3 geos/3.9.1 proj/8.2.1 libspatialindex/1.9.3 netcdf/4.6.3 eccodes/2.31.0 zlib/1.2.9 libtiff/4.2.0 sqlite/3.35.5\n",
"module load gcc/8.2.0 python/3.11.2 hdf5/1.10.1 gdal/3.4.3 geos/3.9.1 proj/8.2.1 libspatialindex/1.9.3 netcdf/4.6.3 eccodes/2.31.0 zlib/1.2.9 libtiff/4.2.0 sqlite/3.35.5\n",
"```\n",
"\n",
"You need to execute this every time you login to Euler before Climada can be used. \n",
Expand Down Expand Up @@ -414,7 +414,7 @@
"\n",
"```\n",
"module purge\n",
"module load StdEnv gcc/8.2.0 python_gpu/3.10.4 eth_proxy r/4.2.2 julia/1.8.5 hdf5/1.10.1 gdal/3.4.3 geos/3.9.1 proj/8.2.1 libspatialindex/1.9.3 netcdf/4.6.3 eccodes/2.31.0 zlib/1.2.9 libtiff/4.2.0 sqlite/3.35.5\n",
"module load StdEnv gcc/8.2.0 python_gpu/3.11.2 eth_proxy hdf5/1.10.1 gdal/3.4.3 geos/3.9.1 proj/8.2.1 libspatialindex/1.9.3 netcdf/4.6.3 eccodes/2.31.0 zlib/1.2.9 libtiff/4.2.0 sqlite/3.35.5\n",
"```\n",
"\n",
"Then login to https://jupyter.euler.hpc.ethz.ch/ and start a JupyterLab server."
Expand Down Expand Up @@ -451,12 +451,19 @@
"- Make sure your python environment is activated.\n",
"- Run `pip install --upgrade MISSING_MODULE`.\n",
"\n",
"### 2. Upgrading from Python 3.9 to 3.10\n",
"### 2. Upgrading from Python 3.9 or 3.10\n",
"\n",
"Virtual environments created with Python 3.9 are i.g. not working for Python 3.10.\n",
"Virtual environments created are i.g. only working for the Python version they were created with.\n",
"In particular Python kernels from 3.9 environments will fail to connect in a Jupyter notebook on https://jupyter.euler.hpc.ethz.ch/.\n",
"\n",
"- It's suggested to create new environments and remove the old kernels from `~/.local/share/jupyter/kernels/`."
"- It's suggested to create new environments and remove the old kernels from `~/.local/share/jupyter/kernels/`.\n",
"\n",
"### 3. Incompatible GEOS version\n",
"\n",
"If you get a warning `UserWarning: The Shapely GEOS version (3.9.1-CAPI-1.14.2) is incompatible with the GEOS version PyGEOS was compiled with (3.9.1-CAPI-1.14.2). Conversions between both will be slow.` or similar (version numbers may vary), updating geopandas can help:\n",
"\n",
"- Create and activate a virtual environment with `venv` (s.a.)\n",
"- Run `pip install --upgrade geopandas`"
]
}
],
Expand Down
Loading