cidc-documentation

CLI instructions and Ingestion workflow documentation regarding the following:

Assays

ATACseq (Fastq)
ctDNA
CyTOF
ELISA
H & E
IHC
MIBI
Microbiome
MiF
Olink
RNAseq (Fastq/Bam)
TCRseq (Fastq/Adaptive)
WES (Fastq/Bam)

Analyses

ATACseq
CyTOF
RNAseq
TCRseq
WES (Tumor-Normal/Tumor-only)