# cidc-documentation

CLI instructions and Ingestion workflow documentation regarding the following:

## Assays

- ATACseq (Fastq)
- ctDNA
- CyTOF
- ELISA
- H & E
- IHC
- MIBI
- Microbiome
- MiF
- Olink
- RNAseq (Fastq/Bam)
- TCRseq (Fastq/Adaptive)
- WES (Fastq/Bam)

## Analyses

- ATACseq
- CyTOF
- RNAseq
- TCRseq
- WES (Tumor-Normal/Tumor-only)