# cidc-documentation CLI instructions and Ingestion workflow documentation regarding the following: ## Assays - ATACseq (Fastq) - ctDNA - CyTOF - ELISA - H & E - IHC - MIBI - Microbiome - MiF - Olink - RNAseq (Fastq/Bam) - TCRseq (Fastq/Adaptive) - WES (Fastq/Bam) ## Analyses - ATACseq - CyTOF - RNAseq - TCRseq - WES (Tumor-Normal/Tumor-only)