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Merge pull request #813 from CIMAC-CIDC/cidc-mailing-list
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replace CIDC_MAILING_LIST to Essex-managed group
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crouchcd authored Jul 10, 2023
2 parents bbf7e5d + c64d7ed commit 92854d6
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34 changes: 19 additions & 15 deletions CHANGELOG.md
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Expand Up @@ -9,6 +9,10 @@ This Changelog tracks changes to this project. The notes below include a summary
- `fixed` for any bug fixes.
- `security` in case of vulnerabilities.

## Version `0.27.45` - 10 July 2023

- `changed` CIDC_MAILING_LIST to Essex-managed group

## 26 Jun 2023

- `changed` admin email
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## Version `0.27.41` - 19 Apr 2023

- `changed` schemas bump to remove microbiome reverse index requirement
- `changed` schemas bump to remove microbiome reverse index requirement

## Version `0.27.40` - 16 Mar 2023

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- only count samples and participants that have associated assay data
- does NOT affect assay-level counts for the Data Overview dashboard
- DOES affect counts for Browse Data > Trial Table and Home Page

## Version `0.27.18` - 03 Nov 2022

- `changed` schemas bump for adding TCR meta csv
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- `fixed` bug in building user permissions for files on the portal
- allowed users with cross-assay permissions to see clinical data files

## Version `0.27.8` - 14 Oct 2022

- `added` credentialing to dataset update
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- `changed` cross-assay permissions to not include clinical data

## Version `0.26.25` - 9 Aug 2022
## Version `0.26.25` - 9 Aug 2022

- `changed` schemas bump for hande manifest req relaxation

## Version `0.26.24` - 2 Aug 2022
## Version `0.26.24` - 2 Aug 2022

- `changed` schemas bump for hande req relaxation

## Version `0.26.23` - 27 Jul 2022
## Version `0.26.23` - 27 Jul 2022

- `changed` schemas bump for clinical data participant count fix

## Version `0.26.22` - 26 Jul 2022
## Version `0.26.22` - 26 Jul 2022

- `changed` schemas bump for new participant alert on manifest upload

## 22 Jul 2022

- `changed` all WES analysis file purpose to "analysis"

## Version `0.26.21` - 13 Jul 2022
## Version `0.26.21` - 13 Jul 2022

- `changed` schemas bump to fix requirements

## Version `0.26.20` - 13 Jul 2022
## Version `0.26.20` - 13 Jul 2022

- `changed` schemas bump for WES template autogeneration tweaks
- `changed` schemas bump for WES analysis cnvkit to copynumber

## Version `0.26.19` - 12 Jul 2022
## Version `0.26.19` - 12 Jul 2022

- `added` schemas bump, attach bytes to email for WES template autogeneration

## Version `0.26.18` - 8 Jul 2022
## Version `0.26.18` - 8 Jul 2022

- `added` schemas bump, facets, counting for WES v3
- `added` migration to move old WES analysis
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## Version `0.25.62` - 13 Jan 2022

- `changed` \*_all_download_permissions to \*_download_permissions, including endpoint address
- `changed` \*\_all_download_permissions to \*\_download_permissions, including endpoint address
- `added` upload_type kwarg to grant_download_permissions
- `added` trial_id and upload_type kwargs to revoke_download_permissions

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- `fixed` trying to add CSMS properties to CIDC entries
- `added` de-identified whole manifest from CSMS directly to test data
- `fixed` reference to CIMAC ID in sample creation within models.templates.csms_api.insert_manifest_from_json()
- `fixed` dict.items() is unhashable, so use dict.keys() to generate a set to check for _calc_difference()
- `fixed` dict.items() is unhashable, so use dict.keys() to generate a set to check for \_calc_difference()

## Version `0.25.37` - 08 Nov 2021

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- `added` grant_lister_access and revoke_lister_access for custom role CIDC Lister that is required for all downloads

## Version `0.25.14` - 24 Sept 2021
## Version `0.25.14` - 24 Sept 2021

- `added` API endpoint to add a new manifest given JSON from CSMS

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### Summary

Initial set up of tables and definition of needed classes for base metadata and assay uploads. Generated new-style templates and added full testing data for pbmc, tissue_slide, h_and_e, wes_<fastq/bam>; demo for clinical_data. Implemented JSON -> Relational sync function and wired for testing. Added relational hooks into existing manifest and assay/analysis uploads. Added way to trigger initial synchronization. Allows relational ClinicalTrials to be edited along with TrialMetadatas from the admin panel.
Initial set up of tables and definition of needed classes for base metadata and assay uploads. Generated new-style templates and added full testing data for pbmc, tissue*slide, h_and_e, wes*<fastq/bam>; demo for clinical_data. Implemented JSON -> Relational sync function and wired for testing. Added relational hooks into existing manifest and assay/analysis uploads. Added way to trigger initial synchronization. Allows relational ClinicalTrials to be edited along with TrialMetadatas from the admin panel.

### Details

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2 changes: 1 addition & 1 deletion cidc_api/__init__.py
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@@ -1 +1 @@
__version__ = "0.27.44"
__version__ = "0.27.45"
2 changes: 1 addition & 1 deletion cidc_api/shared/emails.py
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Expand Up @@ -18,7 +18,7 @@
# - errors from CSMS in update_cidc_from_csms,
# - errors from kicking off permissions in grant_download_permissions, and
# - errors from implementing permissions in worker > permissions_worker
CIDC_MAILING_LIST = "cidc-alert@ds.dfci.harvard.edu"
CIDC_MAILING_LIST = "essex-alert@cimac-network.org"


def sendable(email_template):
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