Testing suite #9
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,69 @@ | ||
| CICE version 6 testing | ||
| June 2017 | ||
|
|
||
| This README file documents how to use the testing suite developed for the | ||
| CICE Consortium sea ice model. The tests currently supported are: | ||
| 1. "Smoke" test - Ensures that the model compiles successfully and runs | ||
| to completion for a 1 day simulation. Validation is | ||
| determined by performing a binary comparison on restart | ||
| files to a baseline dataset. | ||
| 2. 10-day test - Ensures that the model compiles successfully and runs | ||
| to completion for a 10 day simulation. Validation is | ||
| determined by performing a binary comparison on restart | ||
| files to a baseline dataset. | ||
| 3. Exact restart - Ensures that the output from a cold-start simulation | ||
| and a restart simulation provide bit-for-bit identical | ||
| results. | ||
|
There was a problem hiding this comment. State explicitly that a baseline does not need to be created for restart tests |
||
| 4. Annual test - Ensures that the model compiles successfully and runs | ||
| to completion for an annual simulation. Validation is | ||
| determined by performing a binary comparison on restart | ||
| files to a baseline dataset. | ||
|
|
||
| --- To generate a baseline dataset for a test case --- | ||
|
|
||
| Quickstart (example): | ||
|
|
||
| ./create.case -t smoke -m conrad -b | ||
| cd smoke_baseline_gx3_conrad_4x1 | ||
|
There was a problem hiding this comment. remove _baseline from first directory and add .t00 to second one |
||
| ./cice.build | ||
| ./cice.submit | ||
| # After job finishes, check output | ||
| cat test_output | ||
|
|
||
|
|
||
| --- To run a test case and compare to a baseline dataset --- | ||
|
|
||
| Quickstart (example): | ||
|
|
||
| ./create.case -t smoke -m conrad | ||
| cd smoke_gx3_conrad_4x1 | ||
| ./cice.build | ||
| ./cice.submit | ||
| # After job finishes, check output | ||
| cat test_output | ||
|
|
||
|
|
||
| --- To run a regression test (compare cicev6.0.1 output to cicev6.0.0 output) --- | ||
|
|
||
| Quickstart (example): | ||
|
|
||
| ./create.case -t smoke -m conrad -b -bg cicev6.0.1 -bc cicev6.0.0 | ||
| cd smoke_gx3_conrad_4x1 | ||
| ./cice.build | ||
| ./cice.submit | ||
| # After job finishes, check output | ||
| cat test_output | ||
|
|
||
|
|
||
| Additional Details: | ||
| - The '-b' flag can be combined with '-bd' to specify the location where you | ||
| want the baseline dataset to be written. Without specifying '-bd', the | ||
| baseline dataset will be written to the default baseline directory found | ||
| in the env.<machine> file (CICE_MACHINE_BASELINE). | ||
| - If '-b' is not passed, the '-bd' option will specify the location of the | ||
|
There was a problem hiding this comment. should this be -bc instead of -bd? |
||
| baseline dataset that you want to compare to. Without specifying '-bd', | ||
| the scripts will look for baseline datasets in the default baseline | ||
| directory found in the env.<machine> file (CICE_MACHINE_BASELINE). | ||
| - To generate a baseline dataset for a specific version (for regression testing), | ||
| use '-b' in conjunction to '-bg <version_name>'. The scripts will then place | ||
| the baseline dataset in $CICE_MACHINE_BASELINE/<version_name>/ | ||
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,12 +1,15 @@ | ||
| #! /bin/csh -f | ||
|
|
||
| if ( $1 != "" ) then | ||
| echo ${0} ${1} | ||
| else | ||
| echo ${0} | ||
| endif | ||
|
|
||
| source ./cice.settings | ||
| source ${CICE_CASEDIR}/env.${CICE_MACHINE} || exit 2 | ||
|
|
||
| set jobfile = $1 | ||
|
|
||
| set ntasks = ${CICE_NTASKS} | ||
| set nthrds = ${CICE_NTHRDS} | ||
|
|
@@ -24,9 +27,6 @@ if ($ptile > ${maxtpn} / 2) @ ptile = ${maxtpn} / 2 | |
|
|
||
| #========================================== | ||
|
|
||
| cat >! ${jobfile} << EOF0 | ||
| #!/bin/csh -f | ||
| EOF0 | ||
|
|
@@ -48,6 +48,20 @@ cat >> ${jobfile} << EOFB | |
| #BSUB -P ${acct} | ||
| EOFB | ||
|
|
||
| #========================================== | ||
|
|
||
| else if (${CICE_MACHINE} =~ cheyenne*) then | ||
| cat >> ${jobfile} << EOFB | ||
| #PBS -j oe | ||
| #PBS -m ae | ||
| #PBS -V | ||
| #PBS -q regular | ||
| #PBS -N ${CICE_CASENAME} | ||
| #PBS -A ${CICE_ACCT} | ||
| #PBS -l select=${nnodes}:ncpus=${ntasks}:mpiprocs=${ntasks} | ||
| #PBS -l walltime=02:00:00 | ||
| EOFB | ||
|
|
||
| else if (${CICE_MACHINE} =~ thunder* || ${CICE_MACHINE} =~ gordon* || ${CICE_MACHINE} =~ conrad*) then | ||
| cat >> ${jobfile} << EOFB | ||
| #PBS -N ${CICE_CASENAME} | ||
|
|
@@ -78,88 +92,30 @@ EOFB | |
| else if (${CICE_MACHINE} =~ wolf*) then | ||
| cat >> ${jobfile} << EOFB | ||
| #SBATCH -J ${CICE_CASENAME} | ||
| #SBATCH -t 0:45:00 | ||
| #SBATCH -A ${acct} | ||
| #SBATCH -N ${nnodes} | ||
| #SBATCH -e slurm%j.err | ||
| #SBATCH -o slurm%j.out | ||
| ###SBATCH --mail-type END,FAIL | ||
| ###SBATCH [email protected] | ||
| #SBATCH --qos=low | ||
| EOFB | ||
|
|
||
| else if (${CICE_MACHINE} =~ pinto*) then | ||
| cat >> ${jobfile} << EOFB | ||
| #SBATCH -J ${CICE_CASENAME} | ||
| #SBATCH -t 0:45:00 | ||
| #SBATCH -A ${acct} | ||
| #SBATCH -N ${nnodes} | ||
| #SBATCH -e slurm%j.err | ||
| #SBATCH -o slurm%j.out | ||
| ###SBATCH --mail-type END,FAIL | ||
| ###SBATCH [email protected] | ||
| #SBATCH --qos=standby | ||
| EOFB | ||
|
|
||
| else | ||
| echo "${0} ERROR ${CICE_MACHINE} unknown" | ||
| exit -1 | ||
| endif | ||
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,56 @@ | ||
| #! /bin/csh -f | ||
|
|
||
| echo ${0} | ||
|
|
||
| source ./cice.settings | ||
|
|
||
| set jobfile = $1 | ||
|
|
||
| set ntasks = ${CICE_NTASKS} | ||
| set nthrds = ${CICE_NTHRDS} | ||
|
|
||
| #========================================== | ||
|
|
||
| if (${CICE_MACHINE} =~ yellowstone*) then | ||
| cat >> ${jobfile} << EOFR | ||
| setenv MP_TASK_AFFINITY core:\${OMP_NUM_THREADS} | ||
| mpirun.lsf ./cice >&! \$CICE_RUNLOG_FILE | ||
| EOFR | ||
|
|
||
| else if (${CICE_MACHINE} =~ cheyenne*) then | ||
| cat >> ${jobfile} << EOFR | ||
| mpiexec_mpt -n ${ntasks} ./cice >&! \$CICE_RUNLOG_FILE | ||
| EOFR | ||
|
|
||
| else if (${CICE_MACHINE} =~ thunder*) then | ||
| cat >> ${jobfile} << EOFR | ||
| mpiexec_mpt -np ${ntasks} omplace ./cice >&! \$CICE_RUNLOG_FILE | ||
| EOFR | ||
|
|
||
| else if (${CICE_MACHINE} =~ gordon* || ${CICE_MACHINE} =~ conrad*) then | ||
| cat >> ${jobfile} << EOFR | ||
| aprun -n ${ntasks} -N ${ntasks} -d ${nthrds} ./cice >&! \$CICE_RUNLOG_FILE | ||
| EOFR | ||
|
|
||
| else if (${CICE_MACHINE} =~ cori*) then | ||
| cat >> ${jobfile} << EOFR | ||
| srun -n ${ntasks} -c ${nthrds} ./cice >&! \$CICE_RUNLOG_FILE | ||
| EOFR | ||
|
|
||
| else if (${CICE_MACHINE} =~ wolf*) then | ||
| cat >> ${jobfile} << EOFR | ||
| mpirun -np ${ntasks} ./cice >&! \$CICE_RUNLOG_FILE | ||
| EOFR | ||
|
|
||
| else if (${CICE_MACHINE} =~ pinto*) then | ||
| cat >> ${jobfile} << EOFR | ||
| mpirun -np ${ntasks} ./cice >&! \$CICE_RUNLOG_FILE | ||
| EOFR | ||
| #cat >> ${jobfile} << EOFR | ||
| #srun -n ${ntasks} -c ${nthrds} ./cice >&! \$CICE_RUNLOG_FILE | ||
| #EOFR | ||
|
|
||
| else | ||
| echo "${0} ERROR ${CICE_MACHINE} unknown" | ||
| exit -1 | ||
| endif |
Oops, something went wrong.
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
add the actual arguments needed for -t (smoke, 10day, restart, annual)