changes to the vadr subworkflow name, now no longer under entrypoint …

…directory and more general purpose
CDCgov · Jan 9, 2024 · 940899b · 940899b
1 parent 522631e
commit 940899b
Showing 1 changed file with 9 additions and 5 deletions.
diff --git a/subworkflows/entrypoints/vadr_entry.nf → subworkflows/vadr.nf b/subworkflows/entrypoints/vadr_entry.nf → subworkflows/vadr.nf
@@ -6,25 +6,29 @@
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 */
 
-include { VADR                                              } from "../../modules/vadr_annotation/main"
-include { VADR_POST_CLEANUP                                 } from "../../modules/post_vadr_annotation/main"
+include { VADR                                              } from "../modules/vadr_annotation/main"
+include { VADR_POST_CLEANUP                                 } from "../modules/post_vadr_annotation/main"
 
 
 workflow RUN_VADR {
     take:
-    utility_signal
+        utility_signal
+        fasta_files
 
     main:
         // run vadr processes
         VADR (
             utility_signal, 
-            params.fasta_path,
+            fasta_files,
             params.vadr_models_dir
         )
         VADR_POST_CLEANUP (
             VADR.out.vadr_outputs,
             params.meta_path,
-            params.fasta_path
+            fasta_files
         )
+
+    emit:
+        VADR_POST_CLEANUP.out.gff
 }