write fasta straight to Genbank file instead of merging with metadata first #77
Workflow file for this run
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| name: Tostadas CI | |
| on: | |
| pull_request: | |
| types: [opened, reopened] | |
| branches: [master, dev] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Code | |
| uses: actions/checkout@v2 | |
| with: | |
| ref: ${{ github.event.pull_request.head.ref }} | |
| - name: Set Up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.9' | |
| - name: Install Mambaforge | |
| run: | | |
| curl -L -O https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-$(uname)-$(uname -m).sh | |
| bash Mambaforge-$(uname)-$(uname -m).sh -b -p $HOME/mambaforge | |
| export PATH="$HOME/mambaforge/bin:$PATH" | |
| - name: Create Environment and Run Tests | |
| run: | | |
| source $HOME/mambaforge/etc/profile.d/conda.sh | |
| conda activate | |
| mamba env create -f tests/test_env.yml | |
| conda activate tostadas_tests | |
| pytest -p no:warnings tests/test_main.py |