New figure 1 function

[SamuelBrand1]

This is a small PR which modifies the figure 1 generation to meet discussion points in #370 (and elsewhere). The new generation script generates a figure for each latent model choice (one to be used in main ms and others for SI).

Close #374

[codecov-commenter]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 93.09%. Comparing base (717f586) to head (112b91c).

Additional details and impacted files

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  Coverage   93.09%   93.09%           
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  Files          50       50           
  Lines         521      521           
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  Hits          485      485           
  Misses         36       36           

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[seabbs]

Nice looks good. I am a bit surprised you've needed to make subplots and compose vs using AlgebraofGraphics facet mechanics (which is what I would do if making this in ggplot2 for example.

What do you think about moving the legend to below the plot vs on the side?

[SamuelBrand1]

Nice looks good. I am a bit surprised you've needed to make subplots and compose vs using AlgebraofGraphics facet mechanics (which is what I would do if making this in ggplot2 for example.

My problem here was that I/search engines couldn't work out how to vary the ylims figure by figure... I'm being a bit basic here I think. I agree because unlike the first pass fig 1 now the subplots are slightly different sized.

[SamuelBrand1]

I forgot the reference date indication (mentioned by @seabbs f2f)! Added now.

This now closes #377

[seabbs]

Can you do it by specifying it as a variable in the data? I think that would be the ggplot2 solution?