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Correct binsize calculation #70

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Correct binsize calculation #70

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8 changes: 5 additions & 3 deletions bamliquidator_internal/bamliquidator.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -198,11 +198,13 @@ std::vector<double> liquidate(const samfile_t* fp, const bam_index_t* bamidx,
only deal with coord, so use generic item
*/
int startArr[spnum], stopArr[spnum];
int pieceLength = (stop-start) / spnum;

// gff has fully closed intervals thus the length needs +1
int pieceLength = (stop-start+1) / spnum;
for(int i=0; i<spnum; i++)
{
startArr[i] = start + pieceLength*i;
stopArr[i] = start + pieceLength*(i+1);
startArr[i] = start + pieceLength*i;
stopArr[i] = startArr[i] + pieceLength -1;
}

std::deque<ReadItem> items = bamQuery_region(fp,bamidx,coord,strand,extendlen);
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