Update readme.md

proteinshake/readme.md

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 ## Filestructure:
 
-**backend:** Collects and processes raw pdb files from various databases. Creates Collections.
+- **backend:** Collects and processes raw pdb files from various databases. Creates Collections.
 
-    **adapters:** Database adapters to PDB, AFDB, etc.
+   - **adapters:** Database adapters to PDB, AFDB, etc.
 
-    **protein:** The protein object specification.
+   - **protein:** The protein object specification.
 
-    **collection:** A set of protein objects.
+   - **collection:** A set of protein objects.
 
-    **database:*** Unifying database mirror that allows query access to create a collection.
+   - **database:*** Unifying database mirror that allows query access to create a collection.
 
-**frontend:** High level specifications for datasets and tasks.
+- **frontend:** High level specifications for datasets and tasks.
 
-    **datasets:** Load a collection and apply transforms.
+   - **datasets:** Load a collection and apply transforms.
 
-    **tasks:** Various ML prediction problems. Takes a dataset and rearranges the data (sklearn-style X_train, y_train, ...) such that it can be fed to the model (X) and evaluated (y).
+   - **tasks:** Various ML prediction problems. Takes a dataset and rearranges the data (sklearn-style X_train, y_train, ...) such that it can be fed to the model (X) and evaluated (y).
 
-    **evaluators:** Groups relevant metrics for a given class of problems (e.g. classification or regression).
+   - **evaluators:** Groups relevant metrics for a given class of problems (e.g. classification or regression).
 
-    **splitters:** Takes a dataset and generates split indices, either from the data/labels itself or from other resources.
+   - **splitters:** Takes a dataset and generates split indices, either from the data/labels itself or from other resources.
 
-**datasets:** Some relevant collections of proteins, for preprocessed hosting. Each dataset covers some biological topic.
+- **datasets:** Some relevant collections of proteins, for preprocessed hosting. Each dataset covers some biological topic.
 
-**tasks:** The actually implemented biological tasks for the end-user, consisting of a frontend.task in combination with a specific dataset.
+- **tasks:** The actually implemented biological tasks for the end-user, consisting of a frontend.task in combination with a specific dataset.
 
-**transforms:** Various functions to transform proteins, representations, and frameworks.
+- **transforms:** Various functions to transform proteins, representations, and frameworks.