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Update {{ stage_name }}.qmd #33

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merged 2 commits into from
Oct 17, 2024
Merged

Update {{ stage_name }}.qmd #33

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173b39d
Update {{ stage_name }}.qmd
tschwarzl Oct 16, 2024
dd21a93
Update {{ stage_name }}.qmd
tschwarzl Oct 17, 2024
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16 changes: 12 additions & 4 deletions src/dso/templates/stage/quarto/src/{{ stage_name }}.qmd
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Original file line number Diff line number Diff line change
@@ -1,14 +1,22 @@
```{r}
library(conflicted)
library(dso)
#| label: load_libraries

require(conflicted)
require(dso)
```

```{r}
# Set stage dir, compile and load params
#| label: read_params
# read_params sets the stage directory, runs 'dso compile-config'
# and loads params defined in the 'dvc.yaml' 'params' section of the stage

params <- read_params("{{ stage_path }}")
```

```{r}
# Obtain files relative to stage directory, e.g.
#| label: obtain_files_relative_to_stage_dir

# stage_here locates your files relative to the stage path set in read_params
# e.g.
samplesheet <- readr::read_csv(stage_here(params$samplesheet))
```
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